Literature DB >> 17886310

Free energy profile of H-ras membrane anchor upon membrane insertion.

Alemayehu A Gorfe1, Arneh Babakhani, J Andrew McCammon.   

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Year:  2007        PMID： 17886310      PMCID： PMC2481273          DOI： 10.1002/anie.200702379

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  25 in total

1.  GTP-dependent segregation of H-ras from lipid rafts is required for biological activity.

Authors:  I A Prior; A Harding; J Yan; J Sluimer; R G Parton; J F Hancock
Journal:  Nat Cell Biol       Date:  2001-04       Impact factor: 28.824

2.  Interactions of the designed antimicrobial peptide MB21 and truncated dermaseptin S3 with lipid bilayers: molecular-dynamics simulations.

Authors:  Craig M Shepherd; Hans J Vogel; D Peter Tieleman
Journal:  Biochem J       Date:  2003-02-15       Impact factor: 3.857

Review 3.  Translocons, thermodynamics, and the folding of membrane proteins.

Authors:  Stephen H White
Journal:  FEBS Lett       Date:  2003-11-27       Impact factor: 4.124

4.  Three separable domains regulate GTP-dependent association of H-ras with the plasma membrane.

Authors:  Barak Rotblat; Ian A Prior; Cornelia Muncke; Robert G Parton; Yoel Kloog; Yoav I Henis; John F Hancock
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

5.  Assessing the efficiency of free energy calculation methods.

Authors:  David Rodriguez-Gomez; Eric Darve; Andrew Pohorille
Journal:  J Chem Phys       Date:  2004-02-22       Impact factor: 3.488

6.  Overcoming free energy barriers using unconstrained molecular dynamics simulations.

Authors:  Jérôme Hénin; Christophe Chipot
Journal:  J Chem Phys       Date:  2004-08-15       Impact factor: 3.488

7.  An acylation cycle regulates localization and activity of palmitoylated Ras isoforms.

Authors:  Oliver Rocks; Anna Peyker; Martin Kahms; Peter J Verveer; Carolin Koerner; Maria Lumbierres; Jürgen Kuhlmann; Herbert Waldmann; Alfred Wittinghofer; Philippe I H Bastiaens
Journal:  Science       Date:  2005-02-10       Impact factor: 47.728

8.  Insights into the recognition and association of transmembrane alpha-helices. The free energy of alpha-helix dimerization in glycophorin A.

Authors:  Jérôme Hénin; Andrew Pohorille; Christophe Chipot
Journal:  J Am Chem Soc       Date:  2005-06-15       Impact factor: 15.419

9.  Individual palmitoyl residues serve distinct roles in H-ras trafficking, microlocalization, and signaling.

Authors:  Sandrine Roy; Sarah Plowman; Barak Rotblat; Ian A Prior; Cornelia Muncke; Sarah Grainger; Robert G Parton; Yoav I Henis; Yoel Kloog; John F Hancock
Journal:  Mol Cell Biol       Date:  2005-08       Impact factor: 4.272

10.  Membrane localization and flexibility of a lipidated ras peptide studied by molecular dynamics simulations.

Authors:  Alemayehu A Gorfe; Riccardo Pellarin; Amedeo Caflisch
Journal:  J Am Chem Soc       Date:  2004-11-24       Impact factor: 15.419
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  22 in total

1.  Interplay between Membrane Curvature and Cholesterol: Role of Palmitoylated Caveolin-1.

Authors:  Anjali Krishna; Durba Sengupta
Journal:  Biophys J       Date:  2018-12-01       Impact factor: 4.033

2.  What drives the clustering of membrane-bound Ras?

Authors:  Zhenlong Li; Alemayehu A Gorfe
Journal:  Small GTPases       Date:  2012-08-30

3.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

4.  Nonsteroidal anti-inflammatory drugs alter the spatiotemporal organization of Ras proteins on the plasma membrane.

Authors:  Yong Zhou; Kwang-Jin Cho; Sarah J Plowman; John F Hancock
Journal:  J Biol Chem       Date:  2012-03-19       Impact factor: 5.157

5.  Deformation of a Two-domain Lipid Bilayer due to Asymmetric Insertion of Lipid-modified Ras Peptides.

Authors:  Zhenlong Li; Alemayehu A Gorfe
Journal:  Soft Matter       Date:  2013-12-21       Impact factor: 3.679

Review 6.  Regulating the regulator: post-translational modification of RAS.

Authors:  Ian M Ahearn; Kevin Haigis; Dafna Bar-Sagi; Mark R Philips
Journal:  Nat Rev Mol Cell Biol       Date:  2011-12-22       Impact factor: 94.444

7.  Overview of simulation studies on the enzymatic activity and conformational dynamics of the GTPase Ras.

Authors:  Priyanka Prakash; Alemayehu A Gorfe
Journal:  Mol Simul       Date:  2014-03-19       Impact factor: 2.178

8.  Water-membrane partition thermodynamics of an amphiphilic lipopeptide: an enthalpy-driven hydrophobic effect.

Authors:  Alemayehu A Gorfe; Riccardo Baron; J Andrew McCammon
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

9.  Free energy for the permeation of Na(+) and Cl(-) ions and their ion-pair through a zwitterionic dimyristoyl phosphatidylcholine lipid bilayer by umbrella integration with harmonic fourier beads.

Authors:  Ilja V Khavrutskii; Alemayehu A Gorfe; Benzhuo Lu; J Andrew McCammon
Journal:  J Am Chem Soc       Date:  2009-02-11       Impact factor: 15.419

10.  Thermodynamics of peptide insertion and aggregation in a lipid bilayer.

Authors:  Arneh Babakhani; Alemayehu A Gorfe; Judy E Kim; J Andrew McCammon
Journal:  J Phys Chem B       Date:  2008-08-06       Impact factor: 2.991
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