Literature DB >> 17883232

Persistence in metabolic nets.

I M De la Fuente1, N Benitez, A Santamaria, J M Aguirregabiria, J Veguillas.   

Abstract

In an attempt to improve the understanding of complex metabolic dynamic phenomena, we have analysed several 'metabolic networks', dynamical systems which, under a single formulation, take into account the activity of several catalytic dissipative structures, interconnected by substrate fluxes and regulatory signals. These metabolic networks exhibit a rich variety of self-organized dynamic patterns, with e.g., phase transitions emerging in the whole activity of each network. We apply Hurst's R/S analysis to several time series generated by these metabolic networks, and measure Hurst exponents H < 0.5 in most cases. This value of H, indicative of antipersistent processes, is detected at very high significance levels, estimated with detailed Monte Carlo simulations. These results show clearly the considered type of metabolic networks exhibit long-term memory phenomena.

Mesh:

Year:  1999        PMID: 17883232     DOI: 10.1006/bulm.1999.0103

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  10 in total

1.  Global self-regulation of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Alberto Luís Pérez-Samartín; Martín-Blas Pérez-Pinilla; Joseba Bidaurrazaga; Antonio Vera-López
Journal:  PLoS One       Date:  2010-03-02       Impact factor: 3.240

Review 2.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

3.  The metabolic core and catalytic switches are fundamental elements in the self-regulation of the systemic metabolic structure of cells.

Authors:  Ildefonso M De la Fuente; Jesus M Cortes; Martin B Perez-Pinilla; Vicente Ruiz-Rodriguez; Juan Veguillas
Journal:  PLoS One       Date:  2011-11-18       Impact factor: 3.240

4.  Quantitative analysis of the effective functional structure in yeast glycolysis.

Authors:  Ildefonso M De la Fuente; Jesus M Cortes
Journal:  PLoS One       Date:  2012-02-29       Impact factor: 3.240

5.  Elements of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente
Journal:  Front Mol Biosci       Date:  2015-04-28

6.  The number of catalytic elements is crucial for the emergence of metabolic cores.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Martín-Blas Pérez-Pinilla; Antonio Vera-López; Juan Veguillas
Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

Review 7.  Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior.

Authors:  Ildefonso M De la Fuente; Luis Martínez; Jose Carrasco-Pujante; Maria Fedetz; José I López; Iker Malaina
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

8.  Attractor metabolic networks.

Authors:  Ildefonso M De la Fuente; Jesus M Cortes; David A Pelta; Juan Veguillas
Journal:  PLoS One       Date:  2013-03-15       Impact factor: 3.240

9.  Global self-organization of the cellular metabolic structure.

Authors:  Ildefonso M De La Fuente; Luis Martínez; Alberto L Pérez-Samartín; Leire Ormaetxea; Cristian Amezaga; Antonio Vera-López
Journal:  PLoS One       Date:  2008-08-29       Impact factor: 3.240

10.  On the dynamics of the adenylate energy system: homeorhesis vs homeostasis.

Authors:  Ildefonso M De la Fuente; Jesús M Cortés; Edelmira Valero; Mathieu Desroches; Serafim Rodrigues; Iker Malaina; Luis Martínez
Journal:  PLoS One       Date:  2014-10-10       Impact factor: 3.240

  10 in total

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