Literature DB >> 17881830

Comment on Stereochemical restraints revisited: how accurate are refinement targets and how much should protein structures be allowed to deviate from them? by Jaskolski, Gilski, Dauter & Wlodawer (2007).

Boguslaw Stec.   

Abstract

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Year:  2007        PMID： 17881830     DOI： 10.1107/S0907444907041406

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


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  9 in total

1.  Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.

Authors:  Dale E Tronrud; Donald S Berkholz; P Andrew Karplus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-06-19

2.  Conformation dependence of backbone geometry in proteins.

Authors:  Donald S Berkholz; Maxim V Shapovalov; Roland L Dunbrack; P Andrew Karplus
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

3.  Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement.

Authors:  Nigel W Moriarty; Dale E Tronrud; Paul D Adams; P Andrew Karplus
Journal:  FEBS J       Date:  2014-06-17       Impact factor: 5.542

4.  On the complexity of Engh and Huber refinement restraints: the angle τ as example.

Authors:  Wouter G Touw; Gert Vriend
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-11-16

5.  Peptide bond distortions from planarity: new insights from quantum mechanical calculations and peptide/protein crystal structures.

Authors:  Roberto Improta; Luigi Vitagliano; Luciana Esposito
Journal:  PLoS One       Date:  2011-09-16       Impact factor: 3.240

6.  Interplay between peptide bond geometrical parameters in nonglobular structural contexts.

Authors:  Luciana Esposito; Nicole Balasco; Alfonso De Simone; Rita Berisio; Luigi Vitagliano
Journal:  Biomed Res Int       Date:  2013-12-26       Impact factor: 3.411

7.  New tools for the analysis and validation of cryo-EM maps and atomic models.

Authors:  Pavel V Afonine; Bruno P Klaholz; Nigel W Moriarty; Billy K Poon; Oleg V Sobolev; Thomas C Terwilliger; Paul D Adams; Alexandre Urzhumtsev
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-09-03       Impact factor: 7.652

8.  Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion.

Authors:  Vladimir Sychrovsky; Silvie Foldynova-Trantirkova; Nada Spackova; Koen Robeyns; Luc Van Meervelt; Wulf Blankenfeldt; Zuzana Vokacova; Jiri Sponer; Lukas Trantirek
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

9.  Crystallographic model quality at a glance.

Authors:  Ludmila Urzhumtseva; Pavel V Afonine; Paul D Adams; Alexandre Urzhumtsev
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-02-20
  9 in total

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