Literature DB >> 17881384

Simple formulas for gauging the potential impacts of population stratification bias.

Wen-Chung Lee1, Liang-Yi Wang.   

Abstract

The case-control study design is popular for genetic association studies of complex human diseases. However, case-control studies may suffer from bias due to population stratification. In this paper, the authors present simple formulas that can set a limit to the havoc population stratification bias can wreak (the lower and upper bounds of the confounding rate ratio and the upper bound of the type I error rate). The authors demonstrate applications of these formulas using two examples. The formulas can help researchers make more prudent interpretations of their (potentially biased) results.

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Year:  2007        PMID: 17881384     DOI: 10.1093/aje/kwm257

Source DB:  PubMed          Journal:  Am J Epidemiol        ISSN: 0002-9262            Impact factor:   4.897


  11 in total

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Journal:  Arthritis Rheumatol       Date:  2018-10-22       Impact factor: 10.995

2.  Bias formulas for sensitivity analysis of unmeasured confounding for general outcomes, treatments, and confounders.

Authors:  Tyler J Vanderweele; Onyebuchi A Arah
Journal:  Epidemiology       Date:  2011-01       Impact factor: 4.822

3.  Dual effect of the macrophage migration inhibitory factor gene on the development and severity of human systemic lupus erythematosus.

Authors:  Antoine Sreih; Rana Ezzeddine; Lin Leng; Avery LaChance; Geraldine Yu; Yuka Mizue; Lakshman Subrahmanyan; Bernardo A Pons-Estel; Anna-Karin Abelson; Iva Gunnarsson; Elisabet Svenungsson; Joshua Cavett; Stuart Glenn; Lin Zhang; Ruth Montgomery; Andras Perl; Jane Salmon; Marta E Alarcón-Riquelme; John B Harley; Richard Bucala
Journal:  Arthritis Rheum       Date:  2011-12

4.  Correction for multiplicity in genetic association studies of triads: the permutational TDT.

Authors:  James F Troendle; James L Mills
Journal:  Ann Hum Genet       Date:  2010-11-25       Impact factor: 1.670

5.  Testing for genetic association with constrained models using triads.

Authors:  J F Troendle; K F Yu; J L Mills
Journal:  Ann Hum Genet       Date:  2009-01-28       Impact factor: 1.670

6.  SHMT1 1420 and MTHFR 677 variants are associated with rectal but not colon cancer.

Authors:  Viktor Komlósi; Erika Hitre; Eva Pap; Vilmos Adleff; Andrea Réti; Eva Székely; Anna Bíró; Péter Rudnai; Bernadette Schoket; Judit Müller; Béla Tóth; Szabolcs Ottó; Miklós Kásler; Judit Kralovánszky; Barna Budai
Journal:  BMC Cancer       Date:  2010-10-04       Impact factor: 4.430

7.  Assessing the joint effect of population stratification and sample selection in studies of gene-gene (environment) interactions.

Authors:  K F Cheng; J Y Lee
Journal:  BMC Genet       Date:  2012-01-27       Impact factor: 2.797

8.  Investigation of inflammation related gene polymorphism of the mannose-binding lectin 2 in schizophrenia and bipolar disorder.

Authors:  Hasan M Aytac; Menekse S Yazar; Ayse Erol; Sacide Pehlivan
Journal:  Neurosciences (Riyadh)       Date:  2021-10       Impact factor: 0.735

9.  A permutation test for oligoset DNA pooling studies.

Authors:  Hsiao-Yuan Huang; Jui-Hsiang Lin; Wen-Chung Lee
Journal:  PLoS One       Date:  2015-03-12       Impact factor: 3.240

10.  CYP2C9 variants as a risk modifier of NSAID-related gastrointestinal bleeding: a case-control study.

Authors:  Adolfo Figueiras; Ana Estany-Gestal; Carmelo Aguirre; Borja Ruiz; Xavier Vidal; Alfonso Carvajal; Inés Salado; Angel Salgado-Barreira; Luca Rodella; Ugo Moretti; Luisa Ibáñez
Journal:  Pharmacogenet Genomics       Date:  2016-02       Impact factor: 2.089

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