Literature DB >> 17878204

The DOMON domains are involved in heme and sugar recognition.

Lakshminarayan M Iyer1, Vivek Anantharaman, L Aravind.   

Abstract

UNLABELLED: We expand the functionally uncharacterized DOMON domain superfamily to identify several novel families, including the first prokaryotic representatives. Using several computational tools we show that it is involved in ligand binding--either as heme- or sugar-binding domains. We present evidence that the DOMON domain along with the DM13 domain comprises a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. Other novel versions might function as sugar sensors of histidine kinases of bacterial two component systems. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online and also at ftp://ftp.ncbi.nih.gov/pub/aravind/domon/.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17878204     DOI: 10.1093/bioinformatics/btm411

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  19 in total

Review 1.  Cytochromes b561: ascorbate-mediated trans-membrane electron transport.

Authors:  Han Asard; Raffaella Barbaro; Paolo Trost; Alajos Bérczi
Journal:  Antioxid Redox Signal       Date:  2013-02-04       Impact factor: 8.401

2.  Direct Recording of Trans-Plasma Membrane Electron Currents Mediated by a Member of the Cytochrome b561 Family of Soybean.

Authors:  Cristiana Picco; Joachim Scholz-Starke; Margherita Festa; Alex Costa; Francesca Sparla; Paolo Trost; Armando Carpaneto
Journal:  Plant Physiol       Date:  2015-08-17       Impact factor: 8.340

3.  The auxiliary protein complex SaePQ activates the phosphatase activity of sensor kinase SaeS in the SaeRS two-component system of Staphylococcus aureus.

Authors:  Do-Won Jeong; Hoonsik Cho; Marcus B Jones; Kenneth Shatzkes; Fei Sun; Quanjiang Ji; Qian Liu; Scott N Peterson; Chuan He; Taeok Bae
Journal:  Mol Microbiol       Date:  2012-08-27       Impact factor: 3.501

4.  Auxin-responsive genes AIR12 code for a new family of plasma membrane b-type cytochromes specific to flowering plants.

Authors:  Valeria Preger; Nunzio Tango; Christophe Marchand; Stéphane D Lemaire; Donatella Carbonera; Marilena Di Valentin; Alex Costa; Paolo Pupillo; Paolo Trost
Journal:  Plant Physiol       Date:  2009-04-22       Impact factor: 8.340

5.  The Female Post-Mating Response Requires Genes Expressed in the Secondary Cells of the Male Accessory Gland in Drosophila melanogaster.

Authors:  Jessica L Sitnik; Dragan Gligorov; Robert K Maeda; François Karch; Mariana F Wolfner
Journal:  Genetics       Date:  2016-01-08       Impact factor: 4.562

6.  Transcriptome profiling illustrates expression signatures of dehydration tolerance in developing grasspea seedlings.

Authors:  Divya Rathi; Saurabh Gayali; Akanksha Pareek; Subhra Chakraborty; Niranjan Chakraborty
Journal:  Planta       Date:  2019-01-10       Impact factor: 4.116

7.  Structural insight of dopamine β-hydroxylase, a drug target for complex traits, and functional significance of exonic single nucleotide polymorphisms.

Authors:  Abhijeet Kapoor; Manish Shandilya; Suman Kundu
Journal:  PLoS One       Date:  2011-10-20       Impact factor: 3.240

8.  Differential gene expression at coral settlement and metamorphosis--a subtractive hybridization study.

Authors:  David C Hayward; Suzannah Hetherington; Carolyn A Behm; Lauretta C Grasso; Sylvain Forêt; David J Miller; Eldon E Ball
Journal:  PLoS One       Date:  2011-10-31       Impact factor: 3.240

9.  The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains.

Authors:  Robson F De Souza; Lakshminarayan M Iyer; L Aravind
Journal:  Biol Direct       Date:  2009-08-14       Impact factor: 4.540

10.  Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs.

Authors:  Xuezhi Zhang; Karl-Heinz Krause; Ioannis Xenarios; Thierry Soldati; Brigitte Boeckmann
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.