| Literature DB >> 17877809 |
Weihua Meng1, Anne Hughes, Chris C Patterson, Christine Belton, Muhammad S Kamaruddin, Paul G Horan, Frank Kee, Pascal P McKeown.
Abstract
BACKGROUND: The complement factor H (CFH) gene has been recently confirmed to play an essential role in the development of age-related macular degeneration (AMD). There are conflicting reports of its role in coronary heart disease. This study was designed to investigate if, using a family-based approach, there was an association between genetic variants of the CFH gene and risk of early-onset coronary heart disease.Entities:
Mesh:
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Year: 2007 PMID: 17877809 PMCID: PMC2048938 DOI: 10.1186/1471-2350-8-62
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Family structures of 1494 subjects in 580 families
| Number of families | Number of individuals | |
| Proband + parents + 0 sibling | 48 | 144 |
| Proband + parents + 1 sibling | 9 | 36 |
| Proband + parents + 2 sibling | 7 | 35 |
| Proband+1 sibling | 337 | 674 |
| Proband+2 sibling | 128 | 384 |
| Proband+3 sibling | 39 | 156 |
| Proband+4 sibling | 8 | 40 |
| Proband+5 sibling | 3 | 18 |
| Proband+6 sibling | 1 | 7 |
| Total | 580 | 1494 |
Risk factors in the probands and their siblings with premature onset CHD
| Risk factor | Probands (n = 580) | Siblings (n = 786) |
| Age* | 52.0(SD = 7.4) | 56.0(SD = 7.8) |
| Female* | 113 (19.5%) | 429 (54.6%) |
| Male* | 467 (80.5%) | 357 (45.4%) |
| Non smoker* | 116 (20.0%) | 328 (41.7%) |
| Ex smoker* | 249 (42.9%) | 224 (28.5%) |
| Current smoker* | 215 (37.1%) | 234 (29.8%) |
| Hypertension treatment | 148 (25.5%) | 177 (22.5%) |
| Systolic BP ≥ 140 mmHg | 30 (5.2%) | 239 (30.4%) |
| Diastolic BP ≥ 95 mmHg | 1 (0.2%) | 2 (0.3%) |
| Total hypertension* | 179 (30.9%) | 418 (53.2%) |
| Known diabetes* | 53 (9.1%) | 43 (5.5%) |
| Total cholesterol (mmol/l)* | 4.9(SD = 1.1) | 5.8(SD = 1.1) |
* P < 0.01, SD – standard deviation.
Association tests between 6 SNPs and premature heart disease performed using the Transmission Disequilibrium Test/sibling Transmission Disequilibrium Test (TDT/S-TDT)
| SNP name | Coding variant | Allele | Number of informative families | W1 | Expected(W) | Variance(W) | P-value |
| rs 800292 | I62V | CT | 218 | 289 | 288.7 | 60.4 | 0.97 |
| rs 1061170 | Y402H | CT | 323 | 300 | 294.9 | 107.0 | 0.62 |
| rs 2274700 | A473A | AG | 203 | 132 | 128.2 | 57.0 | 0.62 |
| rs 3753396 | Q672Q | AG | 218 | 314 | 310.7 | 61.1 | 0.67 |
| rs 419137 | AC | 181 | 253 | 254.0 | 48.4 | 0.89 | |
| rs 2284664 | AG | 216 | 142 | 141.3 | 59.9 | 0.93 |
1 W = X+Y where X is the number of transmissions of the first-mentioned allele from heterozygote parents to affected siblings (TDT) and Y is the number of occurrences of the first-mentioned allele in affected sibs in remaining informative families (S-TDT).
The 6 SNPs are arranged in an order according to their positions in the CFH gene.
Association between 5 CFH haplotypes and premature heart disease
| Haplotypes | Sequence | W1 | Expected(W) | Variance(W) | P-value |
| H1 | CCGACG | 133 | 131.9 | 47.9 | 0.88 |
| H2 | CCGAAG | 279 | 280.4 | 97.5 | 0.89 |
| H3 | CTGGAG | 181 | 184.5 | 61.6 | 0.66 |
| H4 | TTGAAA | 167 | 167.7 | 58.5 | 0.92 |
| H5 | CTAAAG | 166 | 161.5 | 56.6 | 0.55 |
1 W = X+Y where X is the number of transmissions of the haplotype from heterozygote parents to affected siblings (TDT) and Y is the number of the occurrences of the haplotype in affected sibs in remaining informative families (S-TDT).
The 6 alleles in the Sequence column from left to right are from rs800292 to rs2284664 according to their positions in the CFH gene.