Literature DB >> 17877606

Modes of cytometric bacterial DNA pattern: a tool for pursuing growth.

S Müller1.   

Abstract

Analyses of DNA pattern provide an excellent tool to determine activity states of bacteria. Bacterial cell cycle behaviour is generally different from the eukaryotic one and is pre-determined by the bacteria's diversity within the phylogenetic tree, and their metabolic traits. As a result, every species creates its specific proliferation pattern that differs from every other one. Up to now, just few bacterial species have been investigated and little information is available concerning DNA cycling even in already known species. This prevents understanding of the complexity and diversity of ongoing bacterial interactions in many ecosystems or in biotechnology. Flow cytometry is the only possible technique to shed light on the dynamics of bacterial communities and DNA patterns will help to unlock the hidden principles of their life. This review provides basic knowledge about the molecular background of bacterial cell cycling, discusses modes of cell cycle phases and presents techniques to both obtain DNA patterns and to combine the contained information with physiological cell states.

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Year:  2007        PMID: 17877606      PMCID: PMC6496216          DOI: 10.1111/j.1365-2184.2007.00465.x

Source DB:  PubMed          Journal:  Cell Prolif        ISSN: 0960-7722            Impact factor:   6.831


  101 in total

1.  Sister chromosome cohesion of Escherichia coli.

Authors:  Y Sunako; T Onogi; S Hiraga
Journal:  Mol Microbiol       Date:  2001-12       Impact factor: 3.501

Review 2.  A bacterial cell-cycle regulatory network operating in time and space.

Authors:  Harley H McAdams; Lucy Shapiro
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

Review 3.  The choreographed dynamics of bacterial chromosomes.

Authors:  Zemer Gitai; Martin Thanbichler; Lucy Shapiro
Journal:  Trends Microbiol       Date:  2005-05       Impact factor: 17.079

Review 4.  Divided genomes: negotiating the cell cycle in prokaryotes with multiple chromosomes.

Authors:  Elizabeth S Egan; Michael A Fogel; Matthew K Waldor
Journal:  Mol Microbiol       Date:  2005-06       Impact factor: 3.501

5.  The two Escherichia coli chromosome arms locate to separate cell halves.

Authors:  Xindan Wang; Xun Liu; Christophe Possoz; David J Sherratt
Journal:  Genes Dev       Date:  2006-07-01       Impact factor: 11.361

6.  Population dynamics within a microbial consortium during growth on diesel fuel in saline environments.

Authors:  Sabine Kleinsteuber; Volker Riis; Ingo Fetzer; Hauke Harms; Susann Müller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

7.  A connection between stress and development in the multicellular prokaryote Streptomyces coelicolor A3(2).

Authors:  G H Kelemen; P H Viollier; J Tenor; L Marri; M J Buttner; C J Thompson
Journal:  Mol Microbiol       Date:  2001-05       Impact factor: 3.501

8.  Implications of a simple mathematical model to cancer cell population dynamics.

Authors:  A L Garner; Y Y Lau; D W Jordan; M D Uhler; R M Gilgenbach
Journal:  Cell Prolif       Date:  2006-02       Impact factor: 6.831

9.  Cell cycle kinetic dysregulation in HIV-infected normal lymphocytes.

Authors:  David M Asmuth; Nan Wang; Ying Lu; Xiao-Dong Li; Lisa Reece; Nicholas H A Terry; Richard B Pollard; Mostafa Nokta; James F Leary; R Allen White
Journal:  Cytometry A       Date:  2005-07       Impact factor: 4.355

Review 10.  Control and maintenance of mammalian cell size.

Authors:  Stephen Cooper
Journal:  BMC Cell Biol       Date:  2004-09-29       Impact factor: 4.241

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  14 in total

1.  The use of DRAQ5 to monitor intracellular DNA in Escherichia coli by flow cytometry.

Authors:  Filomena Silva; Olga Lourenço; Cidália Pina-Vaz; Acácio G Rodrigues; João A Queiroz; Fernanda Conceição Domingues
Journal:  J Fluoresc       Date:  2010-03-30       Impact factor: 2.217

2.  Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function.

Authors:  Christin Koch; Susanne Günther; Adey F Desta; Thomas Hübschmann; Susann Müller
Journal:  Nat Protoc       Date:  2013-01-03       Impact factor: 13.491

3.  You are what you talk: quorum sensing induces individual morphologies and cell division modes in Dinoroseobacter shibae.

Authors:  Diana Patzelt; Hui Wang; Ina Buchholz; Manfred Rohde; Lothar Gröbe; Silke Pradella; Alexander Neumann; Stefan Schulz; Steffi Heyber; Karin Münch; Richard Münch; Dieter Jahn; Irene Wagner-Döbler; Jürgen Tomasch
Journal:  ISME J       Date:  2013-07-04       Impact factor: 10.302

4.  Dynamics of polyphosphate-accumulating bacteria in wastewater treatment plant microbial communities detected via DAPI (4',6'-diamidino-2-phenylindole) and tetracycline labeling.

Authors:  S Günther; M Trutnau; S Kleinsteuber; G Hause; T Bley; I Röske; H Harms; S Müller
Journal:  Appl Environ Microbiol       Date:  2009-01-30       Impact factor: 4.792

5.  Cytometric patterns reveal growth states of Shewanella putrefaciens.

Authors:  Susanne Melzer; Gudrun Winter; Kathrin Jäger; Thomas Hübschmann; Gerd Hause; Frank Syrowatka; Hauke Harms; Attila Tárnok; Susann Müller
Journal:  Microb Biotechnol       Date:  2014-09-03       Impact factor: 5.813

6.  Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry.

Authors:  Andrea Neumeyer; Thomas Hübschmann; Susann Müller; Julia Frunzke
Journal:  Microb Biotechnol       Date:  2012-12-20       Impact factor: 5.813

Review 7.  Applications of flow cytometry to characterize bacterial physiological responses.

Authors:  Verónica Ambriz-Aviña; Jorge A Contreras-Garduño; Mario Pedraza-Reyes
Journal:  Biomed Res Int       Date:  2014-09-09       Impact factor: 3.411

8.  Subpopulation-proteomics reveal growth rate, but not cell cycling, as a major impact on protein composition in Pseudomonas putida KT2440.

Authors:  Sarah Lieder; Michael Jahn; Jana Seifert; Martin von Bergen; Susann Müller; Ralf Takors
Journal:  AMB Express       Date:  2014-08-29       Impact factor: 3.298

9.  Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics.

Authors:  Christin Koch; Falk Harnisch; Uwe Schröder; Susann Müller
Journal:  Front Microbiol       Date:  2014-06-04       Impact factor: 5.640

10.  Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Authors:  Andrea Cossarizza; Hyun-Dong Chang; Andreas Radbruch; Andreas Acs; Dieter Adam; Sabine Adam-Klages; William W Agace; Nima Aghaeepour; Mübeccel Akdis; Matthieu Allez; Larissa Nogueira Almeida; Giorgia Alvisi; Graham Anderson; Immanuel Andrä; Francesco Annunziato; Achille Anselmo; Petra Bacher; Cosima T Baldari; Sudipto Bari; Vincenzo Barnaba; Joana Barros-Martins; Luca Battistini; Wolfgang Bauer; Sabine Baumgart; Nicole Baumgarth; Dirk Baumjohann; Bianka Baying; Mary Bebawy; Burkhard Becher; Wolfgang Beisker; Vladimir Benes; Rudi Beyaert; Alfonso Blanco; Dominic A Boardman; Christian Bogdan; Jessica G Borger; Giovanna Borsellino; Philip E Boulais; Jolene A Bradford; Dirk Brenner; Ryan R Brinkman; Anna E S Brooks; Dirk H Busch; Martin Büscher; Timothy P Bushnell; Federica Calzetti; Garth Cameron; Ilenia Cammarata; Xuetao Cao; Susanna L Cardell; Stefano Casola; Marco A Cassatella; Andrea Cavani; Antonio Celada; Lucienne Chatenoud; Pratip K Chattopadhyay; Sue Chow; Eleni Christakou; Luka Čičin-Šain; Mario Clerici; Federico S Colombo; Laura Cook; Anne Cooke; Andrea M Cooper; Alexandra J Corbett; Antonio Cosma; Lorenzo Cosmi; Pierre G Coulie; Ana Cumano; Ljiljana Cvetkovic; Van Duc Dang; Chantip Dang-Heine; Martin S Davey; Derek Davies; Sara De Biasi; Genny Del Zotto; Gelo Victoriano Dela Cruz; Michael Delacher; Silvia Della Bella; Paolo Dellabona; Günnur Deniz; Mark Dessing; James P Di Santo; Andreas Diefenbach; Francesco Dieli; Andreas Dolf; Thomas Dörner; Regine J Dress; Diana Dudziak; Michael Dustin; Charles-Antoine Dutertre; Friederike Ebner; Sidonia B G Eckle; Matthias Edinger; Pascale Eede; Götz R A Ehrhardt; Marcus Eich; Pablo Engel; Britta Engelhardt; Anna Erdei; Charlotte Esser; Bart Everts; Maximilien Evrard; Christine S Falk; Todd A Fehniger; Mar Felipo-Benavent; Helen Ferry; Markus Feuerer; Andrew Filby; Kata Filkor; Simon Fillatreau; Marie Follo; Irmgard Förster; John Foster; Gemma A Foulds; Britta Frehse; Paul S Frenette; Stefan Frischbutter; Wolfgang Fritzsche; David W Galbraith; Anastasia Gangaev; Natalio Garbi; Brice Gaudilliere; Ricardo T Gazzinelli; Jens Geginat; Wilhelm Gerner; Nicholas A Gherardin; Kamran Ghoreschi; Lara Gibellini; Florent Ginhoux; Keisuke Goda; Dale I Godfrey; Christoph Goettlinger; Jose M González-Navajas; Carl S Goodyear; Andrea Gori; Jane L Grogan; Daryl Grummitt; Andreas Grützkau; Claudia Haftmann; Jonas Hahn; Hamida Hammad; Günter Hämmerling; Leo Hansmann; Goran Hansson; Christopher M Harpur; Susanne Hartmann; Andrea Hauser; Anja E Hauser; David L Haviland; David Hedley; Daniela C Hernández; Guadalupe Herrera; Martin Herrmann; Christoph Hess; Thomas Höfer; Petra Hoffmann; Kristin Hogquist; Tristan Holland; Thomas Höllt; Rikard Holmdahl; Pleun Hombrink; Jessica P Houston; Bimba F Hoyer; Bo Huang; Fang-Ping Huang; Johanna E Huber; Jochen Huehn; Michael Hundemer; Christopher A Hunter; William Y K Hwang; Anna Iannone; Florian Ingelfinger; Sabine M Ivison; Hans-Martin Jäck; Peter K Jani; Beatriz Jávega; Stipan Jonjic; Toralf Kaiser; Tomas Kalina; Thomas Kamradt; Stefan H E Kaufmann; Baerbel Keller; Steven L C Ketelaars; Ahad Khalilnezhad; Srijit Khan; Jan Kisielow; Paul Klenerman; Jasmin Knopf; Hui-Fern Koay; Katja Kobow; Jay K Kolls; Wan Ting Kong; Manfred Kopf; Thomas Korn; Katharina Kriegsmann; Hendy Kristyanto; Thomas Kroneis; Andreas Krueger; Jenny Kühne; Christian Kukat; Désirée Kunkel; Heike Kunze-Schumacher; Tomohiro Kurosaki; Christian Kurts; Pia Kvistborg; Immanuel Kwok; Jonathan Landry; Olivier Lantz; Paola Lanuti; Francesca LaRosa; Agnès Lehuen; Salomé LeibundGut-Landmann; Michael D Leipold; Leslie Y T Leung; Megan K Levings; Andreia C Lino; Francesco Liotta; Virginia Litwin; Yanling Liu; Hans-Gustaf Ljunggren; Michael Lohoff; Giovanna Lombardi; Lilly Lopez; Miguel López-Botet; Amy E Lovett-Racke; Erik Lubberts; Herve Luche; Burkhard Ludewig; Enrico Lugli; Sebastian Lunemann; Holden T Maecker; Laura Maggi; Orla Maguire; Florian Mair; Kerstin H Mair; Alberto Mantovani; Rudolf A Manz; Aaron J Marshall; Alicia Martínez-Romero; Glòria Martrus; Ivana Marventano; Wlodzimierz Maslinski; Giuseppe Matarese; Anna Vittoria Mattioli; Christian Maueröder; Alessio Mazzoni; James McCluskey; Mairi McGrath; Helen M McGuire; Iain B McInnes; Henrik E Mei; Fritz Melchers; Susanne Melzer; Dirk Mielenz; Stephen D Miller; Kingston H G Mills; Hans Minderman; Jenny Mjösberg; Jonni Moore; Barry Moran; Lorenzo Moretta; Tim R Mosmann; Susann Müller; Gabriele Multhoff; Luis Enrique Muñoz; Christian Münz; Toshinori Nakayama; Milena Nasi; Katrin Neumann; Lai Guan Ng; Antonia Niedobitek; Sussan Nourshargh; Gabriel Núñez; José-Enrique O'Connor; Aaron Ochel; Anna Oja; Diana Ordonez; Alberto Orfao; Eva Orlowski-Oliver; Wenjun Ouyang; Annette Oxenius; Raghavendra Palankar; Isabel Panse; Kovit Pattanapanyasat; Malte Paulsen; Dinko Pavlinic; Livius Penter; Pärt Peterson; Christian Peth; Jordi Petriz; Federica Piancone; Winfried F Pickl; Silvia Piconese; Marcello Pinti; A Graham Pockley; Malgorzata Justyna Podolska; Zhiyong Poon; Katharina Pracht; Immo Prinz; Carlo E M Pucillo; Sally A Quataert; Linda Quatrini; Kylie M Quinn; Helena Radbruch; Tim R D J Radstake; Susann Rahmig; Hans-Peter Rahn; Bartek Rajwa; Gevitha Ravichandran; Yotam Raz; Jonathan A Rebhahn; Diether Recktenwald; Dorothea Reimer; Caetano Reis e Sousa; Ester B M Remmerswaal; Lisa Richter; Laura G Rico; Andy Riddell; Aja M Rieger; J Paul Robinson; Chiara Romagnani; Anna Rubartelli; Jürgen Ruland; Armin Saalmüller; Yvan Saeys; Takashi Saito; Shimon Sakaguchi; Francisco Sala-de-Oyanguren; Yvonne Samstag; Sharon Sanderson; Inga Sandrock; Angela Santoni; Ramon Bellmàs Sanz; Marina Saresella; Catherine Sautes-Fridman; Birgit Sawitzki; Linda Schadt; Alexander Scheffold; Hans U Scherer; Matthias Schiemann; Frank A Schildberg; Esther Schimisky; Andreas Schlitzer; Josephine Schlosser; Stephan Schmid; Steffen Schmitt; Kilian Schober; Daniel Schraivogel; Wolfgang Schuh; Thomas Schüler; Reiner Schulte; Axel Ronald Schulz; Sebastian R Schulz; Cristiano Scottá; Daniel Scott-Algara; David P Sester; T Vincent Shankey; Bruno Silva-Santos; Anna Katharina Simon; Katarzyna M Sitnik; Silvano Sozzani; Daniel E Speiser; Josef Spidlen; Anders Stahlberg; Alan M Stall; Natalie Stanley; Regina Stark; Christina Stehle; Tobit Steinmetz; Hannes Stockinger; Yousuke Takahama; Kiyoshi Takeda; Leonard Tan; Attila Tárnok; Gisa Tiegs; Gergely Toldi; Julia Tornack; Elisabetta Traggiai; Mohamed Trebak; Timothy I M Tree; Joe Trotter; John Trowsdale; Maria Tsoumakidou; Henning Ulrich; Sophia Urbanczyk; Willem van de Veen; Maries van den Broek; Edwin van der Pol; Sofie Van Gassen; Gert Van Isterdael; René A W van Lier; Marc Veldhoen; Salvador Vento-Asturias; Paulo Vieira; David Voehringer; Hans-Dieter Volk; Anouk von Borstel; Konrad von Volkmann; Ari Waisman; Rachael V Walker; Paul K Wallace; Sa A Wang; Xin M Wang; Michael D Ward; Kirsten A Ward-Hartstonge; Klaus Warnatz; Gary Warnes; Sarah Warth; Claudia Waskow; James V Watson; Carsten Watzl; Leonie Wegener; Thomas Weisenburger; Annika Wiedemann; Jürgen Wienands; Anneke Wilharm; Robert John Wilkinson; Gerald Willimsky; James B Wing; Rieke Winkelmann; Thomas H Winkler; Oliver F Wirz; Alicia Wong; Peter Wurst; Jennie H M Yang; Juhao Yang; Maria Yazdanbakhsh; Liping Yu; Alice Yue; Hanlin Zhang; Yi Zhao; Susanne Maria Ziegler; Christina Zielinski; Jakob Zimmermann; Arturo Zychlinsky
Journal:  Eur J Immunol       Date:  2019-10       Impact factor: 6.688

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