Literature DB >> 17875544

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Remo Sanges1, Francesca Cordero, Raffaele A Calogero.   

Abstract

UNLABELLED: OneChannelGUI is an add-on Bioconductor package providing a new set of functions extending the capability of the affylmGUI package. This library provides a graphical interface (GUI) for Bioconductor libraries to be used for quality control, normalization, filtering, statistical validation and data mining for single channel microarrays. Affymetrix 3' expression (IVT) arrays as well as the new whole transcript expression arrays, i.e. gene/exon 1.0 ST, are actually implemented. oneChannelGUI is available for most platforms on which R runs, i.e. Windows and Unix-like machines. AVAILABILITY: http://www.bioconductor.org/packages/2.0/bioc/html/oneChannelGUI.html

Mesh:

Year:  2007        PMID: 17875544     DOI: 10.1093/bioinformatics/btm469

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  52 in total

1.  Oncoantigens for an immune prevention of cancer.

Authors:  Elisabetta Bolli; Elena Quaglino; Maddalena Arigoni; Pier-Luigi Lollini; Raffaele Calogero; Guido Forni; Federica Cavallo
Journal:  Am J Cancer Res       Date:  2010-12-20       Impact factor: 6.166

2.  HMG20A is required for SNAI1-mediated epithelial to mesenchymal transition.

Authors:  S Rivero; M Ceballos-Chávez; S S Bhattacharya; J C Reyes
Journal:  Oncogene       Date:  2015-02-02       Impact factor: 9.867

3.  Biased inheritance of the protein PatN frees vegetative cells to initiate patterned heterocyst differentiation.

Authors:  Douglas D Risser; Francis C Y Wong; John C Meeks
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

4.  Critical roles for Rictor/Sin1 complexes in interferon-dependent gene transcription and generation of antiproliferative responses.

Authors:  Surinder Kaur; Barbara Kroczynska; Bhumika Sharma; Antonella Sassano; Ahmet Dirim Arslan; Beata Majchrzak-Kita; Brady L Stein; Brandon McMahon; Jessica K Altman; Bing Su; Raffaele A Calogero; Eleanor N Fish; Leonidas C Platanias
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

5.  Identification of differently expressed genes with specific SNP Loci for breast cancer by the integration of SNP and gene expression profiling analyses.

Authors:  Pengfei Yuan; Dechun Liu; Miao Deng; Jiangbo Liu; Jianguang Wang; Like Zhang; Qipeng Liu; Ting Zhang; Yanbin Chen; Gaoyuan Jin
Journal:  Pathol Oncol Res       Date:  2014-11-19       Impact factor: 3.201

6.  Transcription factors GATA4 and HNF4A control distinct aspects of intestinal homeostasis in conjunction with transcription factor CDX2.

Authors:  Adrianna K San Roman; Boaz E Aronson; Stephen D Krasinski; Ramesh A Shivdasani; Michael P Verzi
Journal:  J Biol Chem       Date:  2014-12-08       Impact factor: 5.157

7.  Interaction network analysis revealed biomarkers in myocardial infarction.

Authors:  Tong Zhang; Li-Li Zhao; Zhuo-Ran Zhang; Pei-De Fu; Zhen-Dong Su; Li-Chun Qi; Xue-Qi Li; Yu-Mei Dong
Journal:  Mol Biol Rep       Date:  2014-04-20       Impact factor: 2.316

8.  Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays.

Authors:  Cristina Della Beffa; Francesca Cordero; Raffaele A Calogero
Journal:  BMC Genomics       Date:  2008-11-28       Impact factor: 3.969

9.  Alternative splicing and transcriptome profiling of experimental autoimmune encephalomyelitis using genome-wide exon arrays.

Authors:  Alan Gillett; Klio Maratou; Chris Fewings; Robert A Harris; Maja Jagodic; Tim Aitman; Tomas Olsson
Journal:  PLoS One       Date:  2009-11-10       Impact factor: 3.240

10.  Global gene expression profiling of human pleural mesotheliomas: identification of matrix metalloproteinase 14 (MMP-14) as potential tumour target.

Authors:  Stefania Crispi; Raffaele A Calogero; Mario Santini; Pasquale Mellone; Bruno Vincenzi; Gennaro Citro; Giovanni Vicidomini; Silvia Fasano; Rosaria Meccariello; Gilda Cobellis; Simona Menegozzo; Riccardo Pierantoni; Francesco Facciolo; Alfonso Baldi; Massimo Menegozzo
Journal:  PLoS One       Date:  2009-09-15       Impact factor: 3.240

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