Literature DB >> 17855577

Evaluation of MChip with historic subtype H1N1 influenza A viruses, including the 1918 "Spanish Flu" strain.

Chad L Moore1, James A Smagala, Catherine B Smith, Erica D Dawson, Nancy J Cox, Robert D Kuchta, Kathy L Rowlen.   

Abstract

The robustness of a recently developed diagnostic microarray for influenza, the MChip, was evaluated with 16 historic subtype H1N1 influenza A viruses (A/H1N1), including A/Brevig Mission/1/1918. The matrix gene segments from all 16 viruses were successfully detected on the array. An artificial neural network trained with temporally related A/H1N1 viruses identified A/Brevig Mission/1/1918 as influenza virus A/H1N1 with 94% probability.

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Year:  2007        PMID： 17855577      PMCID： PMC2168478          DOI： 10.1128/JCM.01089-07

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  12 in total

Review 1.  The evolution of human influenza viruses.

Authors:  A J Hay; V Gregory; A R Douglas; Y P Lin
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2001-12-29       Impact factor: 6.237

2.  Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus.

Authors:  Martin Mehlmann; Erica D Dawson; Michael B Townsend; James A Smagala; Chad L Moore; Catherine B Smith; Nancy J Cox; Robert D Kuchta; Kathy L Rowlen
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

3.  Experimental evaluation of the FluChip diagnostic microarray for influenza virus surveillance.

Authors:  Michael B Townsend; Erica D Dawson; Martin Mehlmann; James A Smagala; Daniela M Dankbar; Chad L Moore; Catherine B Smith; Nancy J Cox; Robert D Kuchta; Kathy L Rowlen
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

4.  Characterization of the reconstructed 1918 Spanish influenza pandemic virus.

Authors:  Terrence M Tumpey; Christopher F Basler; Patricia V Aguilar; Hui Zeng; Alicia Solórzano; David E Swayne; Nancy J Cox; Jacqueline M Katz; Jeffery K Taubenberger; Peter Palese; Adolfo García-Sastre
Journal:  Science       Date:  2005-10-07       Impact factor: 47.728

5.  Universal primer set for the full-length amplification of all influenza A viruses.

Authors:  E Hoffmann; J Stech; Y Guan; R G Webster; D R Perez
Journal:  Arch Virol       Date:  2001-12       Impact factor: 2.574

6.  Comparison of the MChip to viral culture, reverse transcription-PCR, and the QuickVue influenza A+B test for rapid diagnosis of influenza.

Authors:  Martin Mehlmann; Aleta B Bonner; John V Williams; Daniela M Dankbar; Chad L Moore; Robert D Kuchta; Amy B Podsiad; John D Tamerius; Erica D Dawson; Kathy L Rowlen
Journal:  J Clin Microbiol       Date:  2007-02-14       Impact factor: 5.948

7.  MChip: a tool for influenza surveillance.

Authors:  Erica D Dawson; Chad L Moore; James A Smagala; Daniela M Dankbar; Martin Mehlmann; Michael B Townsend; Catherine B Smith; Nancy J Cox; Robert D Kuchta; Kathy L Rowlen
Journal:  Anal Chem       Date:  2006-11-15       Impact factor: 6.986

8.  Data mining in bioinformatics using Weka.

Authors:  Eibe Frank; Mark Hall; Len Trigg; Geoffrey Holmes; Ian H Witten
Journal:  Bioinformatics       Date:  2004-04-08       Impact factor: 6.937

Review 9.  Influenza--a model of an emerging virus disease.

Authors:  R G Webster; S M Wright; M R Castrucci; W J Bean; Y Kawaoka
Journal:  Intervirology       Date:  1993       Impact factor: 1.763

10.  The 3' and 5'-terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity.

Authors:  U Desselberger; V R Racaniello; J J Zazra; P Palese
Journal:  Gene       Date:  1980-02       Impact factor: 3.688
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  6 in total

Review 1.  Methods for molecular surveillance of influenza.

Authors:  Ruixue Wang; Jeffery K Taubenberger
Journal:  Expert Rev Anti Infect Ther       Date:  2010-05       Impact factor: 5.091

2.  A one-step RT-PCR array for detection and differentiation of zoonotic influenza viruses H5N1, H9N2, and H1N1.

Authors:  Yao Chen; Tiancai Liu; Lijuan Cai; Hongyan Du; Ming Li
Journal:  J Clin Lab Anal       Date:  2013-11       Impact factor: 2.352

3.  Real-time detection of influenza a, influenza B, and respiratory syncytial virus a and B in respiratory specimens by use of nanoparticle probes.

Authors:  Paul J Jannetto; Blake W Buchan; Kimberly A Vaughan; Joellen S Ledford; Dennis K Anderson; Donald C Henley; Neil B Quigley; Nathan A Ledeboer
Journal:  J Clin Microbiol       Date:  2010-09-08       Impact factor: 5.948

4.  Design and validation of a microarray for detection, hemagglutinin subtyping, and pathotyping of avian influenza viruses.

Authors:  Astrid Gall; Bernd Hoffmann; Timm Harder; Christian Grund; Dirk Höper; Martin Beer
Journal:  J Clin Microbiol       Date:  2008-12-03       Impact factor: 5.948

Review 5.  Updated values for molecular diagnosis for highly pathogenic avian influenza virus.

Authors:  Akira Sakurai; Futoshi Shibasaki
Journal:  Viruses       Date:  2012-08-07       Impact factor: 5.048

6.  Universal oligonucleotide microarray for sub-typing of Influenza A virus.

Authors:  Vladimir A Ryabinin; Elena V Kostina; Galiya A Maksakova; Alexander A Neverov; Konstantin M Chumakov; Alexander N Sinyakov
Journal:  PLoS One       Date:  2011-04-29       Impact factor: 3.240
  6 in total

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