Literature DB >> 17850824

Analysis of a minimal model for p53 oscillations.

Samuel Bottani1, Basile Grammaticos.   

Abstract

Oscillatory behaviours in genetic networks are important examples for studying the principles underlying the dynamics of cellular regulation. Recently the team of Alon has reported a surprisingly rich oscillatory response of the p53 tumor suppressor to irradiation stress et al. [Lahav, G., Rosenfeld, N., Sigal, A., Geva-Zatorsky, N., Levine, A.J., Elowitz, M.B., Alon, U., 2004. Dynamics of the p53-Mdm2 feedback loop in individual cells. Nat. Genet. 36 (2), 147-150; Geva-Zatorsky, N., Rosenfeld, N., Itzkovitz, S., Milo, R., Sigal, A., Dekel, E., Yarnitzky, T., Liron, Y., Polak, P., Lahav, G., Alon, U., 2006. Oscillations and variability in the p53 system. Mol. Syst. Biol. 2, 2006.0033]. Several models for this system have been proposed by different groups, based essentially on negative feedback loops. In this paper we investigate in detail oscillations and stability in a deterministic time delayed differential model of the core circuit for p53 expression. This model is representative of a class of modelling approaches of this system, based on a "minimal" set of well-established biomolecular regulations. Depending on the protein degradation rates we show the existence of bifurcations between a stable steady state and oscillations both in presence and absence of stress.

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Year:  2007        PMID: 17850824     DOI: 10.1016/j.jtbi.2007.04.026

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  4 in total

1.  Analysis and verification of the HMGB1 signaling pathway.

Authors:  Haijun Gong; Paolo Zuliani; Anvesh Komuravelli; James R Faeder; Edmund M Clarke
Journal:  BMC Bioinformatics       Date:  2010-10-15       Impact factor: 3.169

Review 2.  A systems biology view of cancer.

Authors:  Reinhard Laubenbacher; Valerie Hower; Abdul Jarrah; Suzy V Torti; Vladimir Shulaev; Pedro Mendes; Frank M Torti; Steven Akman
Journal:  Biochim Biophys Acta       Date:  2009-06-06

3.  Modeling the basal dynamics of p53 system.

Authors:  Tingzhe Sun; Weiwei Yang; Jing Liu; Pingping Shen
Journal:  PLoS One       Date:  2011-11-16       Impact factor: 3.240

4.  The pharmacodynamics of the p53-Mdm2 targeting drug Nutlin: the role of gene-switching noise.

Authors:  Krzysztof Puszynski; Alberto Gandolfi; Alberto d'Onofrio
Journal:  PLoS Comput Biol       Date:  2014-12-11       Impact factor: 4.475

  4 in total

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