Literature DB >> 17850134

Planar or nonplanar: what is the structure of urea in aqueous solution?

Jose Manuel Hermida-Ramón1, Anders Ohrn, Gunnar Karlström.   

Abstract

A combined quantum chemical statistical mechanical method has been used to study the solvation of urea in water, with emphasis on the structure of urea. The model system consists of three parts: a Hartree-Fock quantum chemical core, 99 water molecules described with a polarizable force-field, and a dielectric continuum. A free-energy profile along the transition of urea from planar to a nonplanar structure is calculated. This mode in aqueous solution is found to be floppy. That is, the structure of urea in water is not well-defined because the planar to nonplanar transition requires an energy of the order of the thermal energy at room temperature. We discuss the implications of this finding for simulation studies of urea in polar environments like water and proteins.

Entities:  

Year:  2007        PMID: 17850134     DOI: 10.1021/jp073579x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

1.  Polarization effects in molecular mechanical force fields.

Authors:  Piotr Cieplak; François-Yves Dupradeau; Yong Duan; Junmei Wang
Journal:  J Phys Condens Matter       Date:  2009-07-24       Impact factor: 2.333

2.  Changes in water structure induced by the guanidinium cation and implications for protein denaturation.

Authors:  J Nathan Scott; Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Phys Chem A       Date:  2008-10-08       Impact factor: 2.781

3.  Structure and dynamics of urea/water mixtures investigated by vibrational spectroscopy and molecular dynamics simulation.

Authors:  J K Carr; L E Buchanan; J R Schmidt; M T Zanni; J L Skinner
Journal:  J Phys Chem B       Date:  2013-07-25       Impact factor: 2.991

  3 in total

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