Literature DB >> 17826854

Ecotoxicological risk assessment using DNA chips and cellular reporters.

Johan Robbens1, Karlijn van der Ven, Marleen Maras, Ronny Blust, Wim De Coen.   

Abstract

Ecotoxicological risk assessment has long been based on (acute) effective concentration and lethal concentration (EC/LC50) endpoints in organisms from different trophic levels. These tests are insufficient adequately to assess the risk associated with many chemical classes. The introduction of advanced molecular techniques is leading to improved risk assessment and is also providing an alternative to the massive use of animal testing. Transcriptional profiling and DNA chips are highly informative and are among the most promising novel techniques for environmental risk assessment. Moreover, information discerned from these chips enables the identification of new discriminative biomarker genes. Based on these biomarker genes, cellular reporters can be constructed. These can be used in a high-throughput set-up and can facilitate ecotoxicological risk assessment significantly. Some important technical and interpretative hurdles still need to be overcome before a full implementation of ecotoxicogenomics in regulatory settings will occur.

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Year:  2007        PMID: 17826854     DOI: 10.1016/j.tibtech.2007.08.005

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  7 in total

1.  Effects of chronic metal exposure on wild fish populations revealed by high-throughput cDNA sequencing.

Authors:  Fabien Pierron; Eric Normandeau; Michel Amery Defo; Peter G C Campbell; Louis Bernatchez; Patrice Couture
Journal:  Ecotoxicology       Date:  2011-05-10       Impact factor: 2.823

2.  From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.

Authors:  Arun Rawat; Kurt A Gust; Youping Deng; Natàlia Garcia-Reyero; Michael J Quinn; Mark S Johnson; Karl J Indest; Mohamed O Elasri; Edward J Perkins
Journal:  Physiol Genomics       Date:  2010-04-20       Impact factor: 3.107

3.  Spillway-induced salmon head injury triggers the generation of brain alphaII-spectrin breakdown product biomarkers similar to mammalian traumatic brain injury.

Authors:  Ann Miracle; Nancy D Denslow; Kevin J Kroll; Ming Cheng Liu; Kevin K W Wang
Journal:  PLoS One       Date:  2009-02-13       Impact factor: 3.240

4.  Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions.

Authors:  Marta P Castro-Ferreira; Tjalf E de Boer; John K Colbourne; Riet Vooijs; Cornelis A M van Gestel; Nico M van Straalen; Amadeu M V M Soares; Mónica J B Amorim; Dick Roelofs
Journal:  BMC Genomics       Date:  2014-04-23       Impact factor: 3.969

5.  Targeted delivery of fluorogenic peptide aptamers into live microalgae by femtosecond laser photoporation at single-cell resolution.

Authors:  Takanori Maeno; Takanori Uzawa; Izumi Kono; Kazunori Okano; Takanori Iino; Keisuke Fukita; Yuki Oshikawa; Taro Ogawa; Osamu Iwata; Takuro Ito; Kengo Suzuki; Keisuke Goda; Yoichiroh Hosokawa
Journal:  Sci Rep       Date:  2018-05-29       Impact factor: 4.379

6.  Identification of potential pathways and microRNA-mRNA networks associated with benzene metabolite hydroquinone-induced hematotoxicity in human leukemia K562 cells.

Authors:  Chun-Hong Yu; Shui-Qing Yang; Lei Li; Yu Xin; Fang Zhang; Xiao-Fan Liu; Zong-Chun Yi
Journal:  BMC Pharmacol Toxicol       Date:  2022-04-02       Impact factor: 2.483

Review 7.  Genomics technology for assessing soil pollution.

Authors:  Nico M van Straalen; Dick Roelofs
Journal:  J Biol       Date:  2008-07-14
  7 in total

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