Literature DB >> 17825342

The genome of epsilon15, a serotype-converting, Group E1 Salmonella enterica-specific bacteriophage.

Andrew M Kropinski1, Irina V Kovalyova, Stephen J Billington, Aaron N Patrick, Brent D Butts, Jared A Guichard, Trevor J Pitcher, Carly C Guthrie, Anya D Sydlaske, Lisa M Barnhill, Kyle A Havens, Kenneth R Day, Darrel R Falk, Michael R McConnell.   

Abstract

The genome sequence of the Salmonella enterica serovar Anatum-specific, serotype-converting bacteriophage epsilon15 has been completed. The nonredundant genome contains 39,671 bp and 51 putative genes. It most closely resembles the genome of phiV10, an Escherichia coli O157:H7-specific temperate phage, with which it shares 36 related genes. More distant relatives include the Burkholderia cepacia-specific phage, BcepC6B (8 similar genes), the Bordetella bronchiseptica-specific phage, BPP-1 (8 similar genes) and the Photobacterium profundum prophage, P Pphipr1 (6 similar genes). epsilon15 gene identifications based on homologies with known gene families include the terminase small and large subunits, integrase, endolysin, two holins, two DNA methylase enzymes (one adenine-specific and one cytosine-specific) and a RecT-like enzyme. Genes identified experimentally include those coding for the serotype conversion proteins, the tail fiber, the major capsid protein and the major repressor. epsilon15's attP site and the Salmonella attB site with which it interacts during lysogenization have also been determined.

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Year:  2007        PMID: 17825342      PMCID: PMC2698709          DOI: 10.1016/j.virol.2007.07.027

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  49 in total

1.  DNA asymmetry and the replicational mutational pressure.

Authors:  M Kowalczuk; P Mackiewicz; D Mackiewicz; A Nowicka; M Dudkiewicz; M R Dudek; S Cebrat
Journal:  J Appl Genet       Date:  2001       Impact factor: 3.240

2.  ENZYMATIC AND KINETIC STUDIES ON THE MECHANISM OF O-ANTIGEN CONVERSION BY BACTERIOPHAGE EPSILON-15.

Authors:  P W ROBBINS; J M KELLER; A WRIGHT; R L BERNSTEIN
Journal:  J Biol Chem       Date:  1965-01       Impact factor: 5.157

3.  An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.

Authors:  Robel Y Kahsay; Guang Gao; Li Liao
Journal:  Bioinformatics       Date:  2005-02-02       Impact factor: 6.937

4.  Nucleotide sequence of the bacteriophage P22 genes required for DNA packaging.

Authors:  K Eppler; E Wyckoff; J Goates; R Parr; S Casjens
Journal:  Virology       Date:  1991-08       Impact factor: 3.616

5.  Identification and characterization of a lysis module present in a large proportion of bacteriophages infecting Streptococcus thermophilus.

Authors:  M M Sheehan; E Stanley; G F Fitzgerald; D van Sinderen
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

6.  Mechanism of epsilon-15 conversion studies with bacteriphage mutants.

Authors:  D Bray; P W Robbins
Journal:  J Mol Biol       Date:  1967-12-28       Impact factor: 5.469

7.  Mechanism of epsilon-15 conversion studies with a bacterial mutant.

Authors:  R Losick; P W Robbins
Journal:  J Mol Biol       Date:  1967-12-28       Impact factor: 5.469

8.  Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF).

Authors:  J A Goodrich; M L Schwartz; W R McClure
Journal:  Nucleic Acids Res       Date:  1990-09-11       Impact factor: 16.971

9.  Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus.

Authors:  Wen Jiang; Juan Chang; Joanita Jakana; Peter Weigele; Jonathan King; Wah Chiu
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

10.  The complete genomic sequence of lytic bacteriophage gh-1 infecting Pseudomonas putida--evidence for close relationship to the T7 group.

Authors:  Irina V Kovalyova; Andrew M Kropinski
Journal:  Virology       Date:  2003-07-05       Impact factor: 3.616

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  26 in total

1.  Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.

Authors:  E J Summer; M Liu; J J Gill; M Grant; T N Chan-Cortes; L Ferguson; C Janes; K Lange; M Bertoli; C Moore; R C Orchard; N D Cohen; R Young
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

2.  Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-EM and modeling.

Authors:  Matthew L Baker; Corey F Hryc; Qinfen Zhang; Weimin Wu; Joanita Jakana; Cameron Haase-Pettingell; Pavel V Afonine; Paul D Adams; Jonathan A King; Wen Jiang; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

3.  Genetic analysis of structural proteins in the adsorption apparatus of bacteriophage epsilon 15.

Authors:  Jared A Guichard; Paula C Middleton; Michael R McConnell
Journal:  World J Virol       Date:  2013-11-12

Review 4.  Diversity among the tailed-bacteriophages that infect the Enterobacteriaceae.

Authors:  Sherwood R Casjens
Journal:  Res Microbiol       Date:  2008-04-30       Impact factor: 3.992

5.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

6.  Time-resolved DNA release from an O-antigen-specific Salmonella bacteriophage with a contractile tail.

Authors:  Nina K Broeker; Yvette Roske; Angelo Valleriani; Mareike S Stephan; Dorothee Andres; Joachim Koetz; Udo Heinemann; Stefanie Barbirz
Journal:  J Biol Chem       Date:  2019-06-12       Impact factor: 5.157

7.  Genomic and proteomic characterization of the broad-host-range Salmonella phage PVP-SE1: creation of a new phage genus.

Authors:  Sílvio B Santos; Andrew M Kropinski; Pieter-Jan Ceyssens; H-W Ackermann; Andre Villegas; Rob Lavigne; Victor N Krylov; Carla M Carvalho; Eugénio C Ferreira; Joana Azeredo
Journal:  J Virol       Date:  2011-08-24       Impact factor: 5.103

Review 8.  Condensed genome structure.

Authors:  Lindsay W Black; Julie A Thomas
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

9.  An engineered R-type pyocin is a highly specific and sensitive bactericidal agent for the food-borne pathogen Escherichia coli O157:H7.

Authors:  Dean Scholl; Mike Cooley; Steve R Williams; Dana Gebhart; David Martin; Anna Bates; Robert Mandrell
Journal:  Antimicrob Agents Chemother       Date:  2009-04-06       Impact factor: 5.191

10.  Antirepression system associated with the life cycle switch in the temperate podoviridae phage SPC32H.

Authors:  Minsik Kim; Sangryeol Ryu
Journal:  J Virol       Date:  2013-08-28       Impact factor: 5.103

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