Literature DB >> 17824386

Sequencing of avian influenza virus genomes following random amplification.

Claudio L Afonso1.   

Abstract

Increasing surveillance for the avian influenza virus (AIV) has underscored the need for quickly and precisely characterizing isolates of this highly variable target. Random amplification, sequencing, and assembly of total RNA from nonpurified virus overcomes the need for specific primers for DNA microarray or PCR protocols.

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Year:  2007        PMID： 17824386     DOI： 10.2144/000112529

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


  6 in total

1.  Evidence for a new avian paramyxovirus serotype 10 detected in rockhopper penguins from the Falkland Islands.

Authors:  Patti J Miller; Claudio L Afonso; Erica Spackman; Melissa A Scott; Janice C Pedersen; Dennis A Senne; Justin D Brown; Chad M Fuller; Marcela M Uhart; William B Karesh; Ian H Brown; Dennis J Alexander; David E Swayne
Journal:  J Virol       Date:  2010-08-11       Impact factor: 5.103

2.  Use of Sequence-Independent, Single-Primer-Amplification (SISPA) for rapid detection, identification, and characterization of avian RNA viruses.

Authors:  Klaudia Chrzastek; Dong-Hun Lee; Diane Smith; Poonam Sharma; David L Suarez; Mary Pantin-Jackwood; Darrell R Kapczynski
Journal:  Virology       Date:  2017-06-21       Impact factor: 3.616

3.  Human airway epithelial cell culture to identify new respiratory viruses: coronavirus NL63 as a model.

Authors:  Bridget S Banach; Jan M Orenstein; Linda M Fox; Scott H Randell; Anne H Rowley; Susan C Baker
Journal:  J Virol Methods       Date:  2008-12-05       Impact factor: 2.014

4.  The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing.

Authors:  Toon Rosseel; Steven Van Borm; Frank Vandenbussche; Bernd Hoffmann; Thierry van den Berg; Martin Beer; Dirk Höper
Journal:  PLoS One       Date:  2013-09-26       Impact factor: 3.240

Review 5.  Emerging molecular assays for detection and characterization of respiratory viruses.

Authors:  Wenjuan Wu; Yi-Wei Tang
Journal:  Clin Lab Med       Date:  2009-12       Impact factor: 1.935

6.  Next-generation sequencing library preparation method for identification of RNA viruses on the Ion Torrent Sequencing Platform.

Authors:  Guiqian Chen; Yuan Qiu; Qingye Zhuang; Suchun Wang; Tong Wang; Jiming Chen; Kaicheng Wang
Journal:  Virus Genes       Date:  2018-05-09       Impact factor: 2.332
  6 in total

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