Literature DB >> 17823855

Enzymatic deconstruction of backbone structures of the ramified regions in pectins.

Dominic Wong1.   

Abstract

The pectic enzymes are a diverse group of enzymes that collectively degrade pectin, a mixture of highly heterogeneous and branched polysaccharides rich in D: -galacturonic acids forming a major component of the primary cell wall of plants. This review covers key enzymes that function to deconstruct the "ramified region" of pectin. The enzymes include glycoside hydrolases and polysaccharide lyases that degrade complex pectic domains consisting of rhamnogalacturonans, xylogalacturonans, and other heterogeneous polymers. The chemical nature of the pectic substrates for the enzymes is presented. The biochemical properties of the enzymes, the mechanisms of enzyme actions, and related structures and functions, are described. Applications of these enzymes in fruit juice processing and in the production of bioactive compounds, as well as their technological relevance to the deconstruction of cell wall structures for biomass conversion are discussed.

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Year:  2008        PMID: 17823855     DOI: 10.1007/s10930-007-9105-0

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  55 in total

1.  Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4.

Authors:  Michael A McDonough; Renuka Kadirvelraj; Pernille Harris; Jens-Christian N Poulsen; Sine Larsen
Journal:  FEBS Lett       Date:  2004-05-07       Impact factor: 4.124

2.  A sycamore cell wall polysaccharide and a chemically related tomato leaf polysaccharide possess similar proteinase inhibitor-inducing activities.

Authors:  C A Ryan; P Bishop; G Pearce
Journal:  Plant Physiol       Date:  1981-09       Impact factor: 8.340

3.  Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate.

Authors:  Takafumi Itoh; Akihito Ochiai; Bunzo Mikami; Wataru Hashimoto; Kousaku Murata
Journal:  Biochem Biophys Res Commun       Date:  2006-07-17       Impact factor: 3.575

4.  Rhamnogalacturonan alpha-d-galactopyranosyluronohydrolase. An enzyme that specifically removes the terminal nonreducing galacturonosyl residue in rhamnogalacturonan regions of pectin

Authors: 
Journal:  Plant Physiol       Date:  1998-05       Impact factor: 8.340

5.  Cloning and characterization of two structurally and functionally divergent rhamnogalacturonases from Aspergillus aculeatus.

Authors:  L V Kofod; S Kauppinen; S Christgau; L N Andersen; H P Heldt-Hansen; K Dörreich; H Dalbøge
Journal:  J Biol Chem       Date:  1994-11-18       Impact factor: 5.157

6.  Structural characterization of the pectic polysaccharide, rhamnogalacturonan-II.

Authors:  A J Whitcombe; M A O'Neill; W Steffan; P Albersheim; A G Darvill
Journal:  Carbohydr Res       Date:  1995-07-10       Impact factor: 2.104

7.  A rhamnogalacturonan lyase in the Clostridium cellulolyticum cellulosome.

Authors:  Sandrine Pagès; Odile Valette; Laetitia Abdou; Anne Bélaïch; Jean-Pierre Bélaïch
Journal:  J Bacteriol       Date:  2003-08       Impact factor: 3.490

8.  Analysis of the molecular construction of xylogalacturonan isolated from soluble soybean polysaccharides.

Authors:  Akihiro Nakamura; Hitoshi Furuta; Hirokazu Maeda; Toshifumi Takao; Yasunori Nagamatsu
Journal:  Biosci Biotechnol Biochem       Date:  2002-05       Impact factor: 2.043

9.  Cloning, sequence and expression of the gene coding for rhamnogalacturonase of Aspergillus aculeatus; a novel pectinolytic enzyme.

Authors:  M E Suykerbuyk; P J Schaap; H Stam; W Musters; J Visser
Journal:  Appl Microbiol Biotechnol       Date:  1995-10       Impact factor: 4.813

10.  The RhaS activator controls the Erwinia chrysanthemi 3937 genes rhiN, rhiT and rhiE involved in rhamnogalacturonan catabolism.

Authors:  Nicole Hugouvieux-Cotte-Pattat
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

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  8 in total

1.  Biochemical Characterization and Overexpression of an Endo-rhamnogalacturonan Lyase from Penicillium chrysogenum.

Authors:  Marin Iwai; Hiroyuki Yamada; Takeshi Ikemoto; Shotaro Matsumoto; Daisuke Fujiwara; Shigeo Takenaka; Tatsuji Sakamoto
Journal:  Mol Biotechnol       Date:  2015-06       Impact factor: 2.695

Review 2.  Molecular and genetic regulation of fruit ripening.

Authors:  Nigel E Gapper; Ryan P McQuinn; James J Giovannoni
Journal:  Plant Mol Biol       Date:  2013-04-13       Impact factor: 4.076

3.  Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases.

Authors:  Camila R Santos; Carla C Polo; Maria C M F Costa; Andrey F Z Nascimento; Andreia N Meza; Junio Cota; Zaira B Hoffmam; Rodrigo V Honorato; Paulo S L Oliveira; Gustavo H Goldman; Harry J Gilbert; Rolf A Prade; Roberto Ruller; Fabio M Squina; Dominic W S Wong; Mário T Murakami
Journal:  J Biol Chem       Date:  2014-01-27       Impact factor: 5.157

4.  Expression and Characterization of Hyperthermostable Exo-polygalacturonase TtGH28 from Thermotoga thermophilus.

Authors:  Kurt Wagschal; J Rose Stoller; Victor J Chan; Charles C Lee; Arabela A Grigorescu; Douglas B Jordan
Journal:  Mol Biotechnol       Date:  2016-07       Impact factor: 2.695

5.  Cell wall glycosidase activities and protein content variations during fruit development and ripening in three texture contrasted tomato cultivars.

Authors:  Emadeldin H E Konozy; Mathilde Causse; Mireille Faurobert
Journal:  Saudi J Biol Sci       Date:  2012-05-02       Impact factor: 4.219

Review 6.  Fungal enzyme sets for plant polysaccharide degradation.

Authors:  Joost van den Brink; Ronald P de Vries
Journal:  Appl Microbiol Biotechnol       Date:  2011-07-23       Impact factor: 4.813

7.  Immunolocalization of pectic polysaccharides during abscission in pea seeds (Pisum sativum L.) and in abscission less def pea mutant seeds.

Authors:  YeonKyeong Lee; Kwadwo Owusu Ayeh; Mike Ambrose; Anne Kathrine Hvoslef-Eide
Journal:  BMC Res Notes       Date:  2016-08-31

8.  GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans.

Authors:  Jiali Meng; Zoltán Németh; Mao Peng; Erzsébet Fekete; Sandra Garrigues; Anna Lipzen; Vivian Ng; Emily Savage; Yu Zhang; Igor V Grigoriev; Miia R Mäkelä; Levente Karaffa; Ronald P de Vries
Journal:  Microb Biotechnol       Date:  2022-02-25       Impact factor: 6.575

  8 in total

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