Literature DB >> 17822776

Reconstruction of an average cortical column in silico.

M Helmstaedter1, C P J de Kock, D Feldmeyer, R M Bruno, B Sakmann.   

Abstract

The characterization of individual neurons by Golgi and Cajal has been the basis of neuroanatomy for a century. A new challenge is to anatomically describe, at cellular resolution, complete local circuits that can drive behavior. In this essay, we review the possibilities to obtain a model cortical column by using in vitro and in vivo pair recordings, followed by anatomical reconstructions of the projecting and target cells. These pairs establish connection modules that eventually may be useful to synthesize an average cortical column in silico. Together with data on sensory evoked neuronal activity measured in vivo, this will allow to model the anatomical and functional cellular basis of behavior based on more realistic assumptions than previously attempted.

Mesh:

Year:  2007        PMID: 17822776     DOI: 10.1016/j.brainresrev.2007.07.011

Source DB:  PubMed          Journal:  Brain Res Rev        ISSN: 0165-0173


  46 in total

Review 1.  Large-scale automated histology in the pursuit of connectomes.

Authors:  David Kleinfeld; Arjun Bharioke; Pablo Blinder; Davi D Bock; Kevin L Briggman; Dmitri B Chklovskii; Winfried Denk; Moritz Helmstaedter; John P Kaufhold; Wei-Chung Allen Lee; Hanno S Meyer; Kristina D Micheva; Marcel Oberlaender; Steffen Prohaska; R Clay Reid; Stephen J Smith; Shinya Takemura; Philbert S Tsai; Bert Sakmann
Journal:  J Neurosci       Date:  2011-11-09       Impact factor: 6.167

2.  Inhibitory interneurons in a cortical column form hot zones of inhibition in layers 2 and 5A.

Authors:  Hanno S Meyer; Daniel Schwarz; Verena C Wimmer; Arno C Schmitt; Jason N D Kerr; Bert Sakmann; Moritz Helmstaedter
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

3.  Semi-automated three-dimensional reconstructions of individual neurons reveal cell type-specific circuits in cortex.

Authors:  Zimbo Srm Boudewijns; Tatjana Kleele; Huibert D Mansvelder; Bert Sakmann; Christiaan Pj de Kock; Marcel Oberlaender
Journal:  Commun Integr Biol       Date:  2011-07-01

4.  Improved biocytin labeling and neuronal 3D reconstruction.

Authors:  Manuel Marx; Robert H Günter; Werner Hucko; Gabriele Radnikow; Dirk Feldmeyer
Journal:  Nat Protoc       Date:  2012-02-02       Impact factor: 13.491

5.  Stationary-State Statistics of a Binary Neural Network Model with Quenched Disorder.

Authors:  Diego Fasoli; Stefano Panzeri
Journal:  Entropy (Basel)       Date:  2019-06-26       Impact factor: 2.524

6.  Generating a model of the three-dimensional spatial distribution of neurons using density maps.

Authors:  Luis Cruz; Brigita Urbanc; Andrew Inglis; Douglas L Rosene; H E Stanley
Journal:  Neuroimage       Date:  2008-01-05       Impact factor: 6.556

7.  Top-down laminar organization of the excitatory network in motor cortex.

Authors:  Nicholas Weiler; Lydia Wood; Jianing Yu; Sara A Solla; Gordon M G Shepherd
Journal:  Nat Neurosci       Date:  2008-02-03       Impact factor: 24.884

8.  Precision mapping of the vibrissa representation within murine primary somatosensory cortex.

Authors:  Per M Knutsen; Celine Mateo; David Kleinfeld
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2016-10-05       Impact factor: 6.237

9.  Ultra high-resolution fMRI and electrophysiology of the rat primary somatosensory cortex.

Authors:  Yen-Yu Ian Shih; You-Yin Chen; Hsin-Yi Lai; Yu-Chieh Jill Kao; Bai-Chuang Shyu; Timothy Q Duong
Journal:  Neuroimage       Date:  2013-02-04       Impact factor: 6.556

10.  Synaptic Conductance Estimates of the Connection Between Local Inhibitor Interneurons and Pyramidal Neurons in Layer 2/3 of a Cortical Column.

Authors:  Jochen H O Hoffmann; H S Meyer; Arno C Schmitt; Jakob Straehle; Trinh Weitbrecht; Bert Sakmann; Moritz Helmstaedter
Journal:  Cereb Cortex       Date:  2015-03-10       Impact factor: 5.357

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