Literature DB >> 17765664

A step-by-step tutorial to use HierFstat to analyse populations hierarchically structured at multiple levels.

Thierry de Meeûs1, Jérôme Goudet.   

Abstract

The populations of parasites and infectious agents are most of the time structured in complex hierarchy that lies beyond the classical nested design described by Wright's F-statistics (F(IS), F(ST) and F(IT)). In this note we propose a user-friendly step-by-step notice for using recent software (HierFstat) that computes and test fixation indices for any hierarchical structure. We add some tricks and tips for some special data kind (haploid, single locus), some other procedure (bootstrap over loci) and how to handle crossed factors.

Mesh：

Year:  2007        PMID： 17765664     DOI： 10.1016/j.meegid.2007.07.005

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN： 1567-1348            Impact factor:   3.342


  27 in total

1.  Population genetic structure of wild and farmed rusa deer (Cervus timorensis russa) in New-Caledonia inferred from polymorphic microsatellite loci.

Authors:  M de Garine-Wichatitsky; T de Meeûs; C Chevillon; D Berthier; N Barré; S Thévenon; J-C Maillard
Journal:  Genetica       Date:  2009-08-14       Impact factor: 1.082

2.  Species delimitation in endangered groundwater salamanders: Implications for aquifer management and biodiversity conservation.

Authors:  Thomas J Devitt; April M Wright; David C Cannatella; David M Hillis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-14       Impact factor: 11.205

3.  Inbreeding within human Schistosoma mansoni: do host-specific factors shape the genetic composition of parasite populations?

Authors:  F Van den Broeck; L Meurs; J A M Raeymaekers; N Boon; T N Dieye; F A M Volckaert; K Polman; T Huyse
Journal:  Heredity (Edinb)       Date:  2014-03-12       Impact factor: 3.821

4.  Heterozygote deficiencies in parasite populations: an evaluation of interrelated hypotheses in the raccoon tick, Ixodes texanus.

Authors:  G Dharmarajan; J C Beasley; O E Rhodes
Journal:  Heredity (Edinb)       Date:  2010-07-07       Impact factor: 3.821

5.  Population genetics as a tool to select tsetse control strategies: suppression or eradication of Glossina palpalis gambiensis in the Niayes of Senegal.

Authors:  Philippe Solano; Dramane Kaba; Sophie Ravel; Naomi A Dyer; Baba Sall; Marc J B Vreysen; Momar T Seck; Heather Darbyshir; Laetitia Gardes; Martin J Donnelly; Thierry De Meeûs; Jérémy Bouyer
Journal:  PLoS Negl Trop Dis       Date:  2010-05-25

6.  A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.

Authors:  Jianjian Qi; Xin Liu; Di Shen; Han Miao; Bingyan Xie; Xixiang Li; Peng Zeng; Shenhao Wang; Yi Shang; Xingfang Gu; Yongchen Du; Ying Li; Tao Lin; Jinhong Yuan; Xueyong Yang; Jinfeng Chen; Huiming Chen; Xingyao Xiong; Ke Huang; Zhangjun Fei; Linyong Mao; Li Tian; Thomas Städler; Susanne S Renner; Sophien Kamoun; William J Lucas; Zhonghua Zhang; Sanwen Huang
Journal:  Nat Genet       Date:  2013-10-20       Impact factor: 38.330

7.  Uneven distribution of mating types among genotypes of Candida glabrata isolates from clinical samples.

Authors:  Sylvain Brisse; Christine Pannier; Adela Angoulvant; Thierry de Meeus; Laure Diancourt; Odile Faure; Héloïse Muller; Javier Peman; Maria Anna Viviani; Renée Grillot; Bernard Dujon; Cécile Fairhead; Christophe Hennequin
Journal:  Eukaryot Cell       Date:  2009-01-16

Review 8.  Understanding the genetic, demographical and/or ecological processes at play in invasions: lessons from the southern cattle tick Rhipicephalus microplus (Acari: Ixodidae).

Authors:  Christine Chevillon; Michel de Garine-Wichatitsky; Nicolas Barré; Sophie Ducornez; Thierry de Meeûs
Journal:  Exp Appl Acarol       Date:  2012-09-04       Impact factor: 2.132

9.  Contrasting population structures of two vectors of African trypanosomoses in Burkina Faso: consequences for control.

Authors:  Naférima Koné; Jérémy Bouyer; Sophie Ravel; Marc J B Vreysen; Kouadjo T Domagni; Sandrine Causse; Philippe Solano; Thierry de Meeûs
Journal:  PLoS Negl Trop Dis       Date:  2011-06-28

10.  Population genetics of Glossina palpalis palpalis from central African sleeping sickness foci.

Authors:  Trésor Tito Tanekou T T Melachio; Gustave Simo; Sophie Ravel; Thierry De Meeûs; Sandrine Causse; Philippe Solano; Pascal Lutumba; Tazoacha Asonganyi; Flobert Njiokou
Journal:  Parasit Vectors       Date:  2011-07-18       Impact factor: 3.876
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