Literature DB >> 17763925

Characterization of his-tagged rat uroporphyrinogen III synthase wild-type and variant enzymes.

Nan Li1, Dik-Lung Ma, Xiaojun Liu, Long Wu, Xiusheng Chu, Kwok-Yin Wong, Ding Li.   

Abstract

The structurally related tetrapyrrolic pigments are a group of natural products that participate in many of the fundamental biosynthetic and catabolic processes of living organisms. Urogen III synthase catalyzes a key step in the formation of urogen III, a common intermediate for tetrapyrrolic natural products. In the present study, we cloned, purified, and characterized His-tagged rat urogen III synthase. The mechanism of enzymatic reaction was studied through site-directed mutagenesis of eight highly conserved residues with functional side chains around the active site followed with activity tests. Lys10, Asp17, Glu68, Tyr97, Asn121, Lys147, and His173 have not been studied previously, which were found to be unessential for enzymatic reaction. Tyr168 was identified as an important residue for enzymatic reaction catalyzed by rat urogen III synthase. Molecular modeling suggests the hydroxyl group of Tyr168 side chain is 3.5 A away from the D ring, and is within hydrogen bond distance (1.9 A) with acetate side chain of the D ring.

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Year:  2007        PMID: 17763925     DOI: 10.1007/s10930-007-9099-7

Source DB:  PubMed          Journal:  Protein J        ISSN: 1572-3887            Impact factor:   2.371


  28 in total

1.  Multiple sequence alignment with the Clustal series of programs.

Authors:  Ramu Chenna; Hideaki Sugawara; Tadashi Koike; Rodrigo Lopez; Toby J Gibson; Desmond G Higgins; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Flexible protein-ligand docking by global energy optimization in internal coordinates.

Authors:  M Totrov; R Abagyan
Journal:  Proteins       Date:  1997

Review 3.  Regulation of tetrapyrrole biosynthesis in higher plants.

Authors:  M Moulin; A G Smith
Journal:  Biochem Soc Trans       Date:  2005-08       Impact factor: 5.407

4.  Crystal structure of human uroporphyrinogen III synthase.

Authors:  M A Mathews; H L Schubert; F G Whitby; K J Alexander; K Schadick; H A Bergonia; J D Phillips; C P Hill
Journal:  EMBO J       Date:  2001-11-01       Impact factor: 11.598

Review 5.  Novel insights in the control of tetrapyrrole metabolism of higher plants.

Authors:  B Grimm
Journal:  Curr Opin Plant Biol       Date:  1998-06       Impact factor: 7.834

6.  Isolation of the gene HEM4 encoding uroporphyrinogen III synthase in Saccharomyces cerevisiae.

Authors:  J M Amillet; R Labbe-Bois
Journal:  Yeast       Date:  1995-04-30       Impact factor: 3.239

7.  Rat liver uroporphyrinogen III synthase has similar properties to the enzyme from Euglena gracilis, including absence of a requirement for a reversibly bound cofactor for activity.

Authors:  E Smythe; D C Williams
Journal:  Biochem J       Date:  1988-07-01       Impact factor: 3.857

Review 8.  Green or red: what stops the traffic in the tetrapyrrole pathway?

Authors:  Johanna E Cornah; Matthew J Terry; Alison G Smith
Journal:  Trends Plant Sci       Date:  2003-05       Impact factor: 18.313

9.  Purification and properties of uroporphyrinogen III synthase from human erythrocytes.

Authors:  S F Tsai; D F Bishop; R J Desnick
Journal:  J Biol Chem       Date:  1987-01-25       Impact factor: 5.157

Review 10.  Structural diversity in metal ion chelation and the structure of uroporphyrinogen III synthase.

Authors:  H L Schubert; E Raux; M A A Matthews; J D Phillips; K S Wilson; C P Hill; M J Warren
Journal:  Biochem Soc Trans       Date:  2002-08       Impact factor: 5.407

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