Literature DB >> 17720901

Genetic dissection of cytonuclear epistasis in line crosses.

Zaixiang Tang1, Xuefeng Wang, Zhiqiu Hu, Zefeng Yang, Chenwu Xu.   

Abstract

Dissection of cytonuclear interactions is fundamentally important for understanding the genetic architecture of complex traits. Here we propose a mating design based on reciprocal crosses and extend the existing QTL mapping method to evaluate the contribution of cytoplasm and QTL x cytoplasm interactions to the phenotypic variation. Efficiency of the design and method is demonstrated via simulated data.

Mesh：

Year:  2007        PMID： 17720901      PMCID： PMC2013686          DOI： 10.1534/genetics.107.074302

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  23 in total

Review 1.  Genomic imprinting: parental influence on the genome.

Authors:  W Reik; J Walter
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

2.  Bayesian model choice and search strategies for mapping interacting quantitative trait Loci.

Authors:  Nengjun Yi; Shizhong Xu; David B Allison
Journal:  Genetics       Date:  2003-10       Impact factor: 4.562

3.  Mitochondrial DNA modifies cognition in interaction with the nuclear genome and age in mice.

Authors:  Pierre L Roubertoux; Frans Sluyter; Michèle Carlier; Brice Marcet; Fatima Maarouf-Veray; Chabane Chérif; Charlotte Marican; Patricia Arrechi; Fabienne Godin; Marc Jamon; Bernard Verrier; Charles Cohen-Salmon
Journal:  Nat Genet       Date:  2003-08-17       Impact factor: 38.330

4.  Contributions of heterosis and epistasis to hybrid fitness.

Authors:  Jennifer M Rhode; Mitchell B Cruzan
Journal:  Am Nat       Date:  2005-08-30       Impact factor: 3.926

5.  Epistasis for fitness-related quantitative traits in Arabidopsis thaliana grown in the field and in the greenhouse.

Authors:  Russell L Malmberg; Stephanie Held; Ashleigh Waits; Rodney Mauricio
Journal:  Genetics       Date:  2005-09-12       Impact factor: 4.562

6.  Cytonuclear coevolution: the genomics of cooperation.

Authors:  David M Rand; Robert A Haney; Adam J Fry
Journal:  Trends Ecol Evol       Date:  2004-12       Impact factor: 17.712

7.  A statistical framework for genome-wide scanning and testing of imprinted quantitative trait loci.

Authors:  Yuehua Cui
Journal:  J Theor Biol       Date:  2006-08-08       Impact factor: 2.691

8.  Multiple trait analysis of genetic mapping for quantitative trait loci.

Authors:  C Jiang; Z B Zeng
Journal:  Genetics       Date:  1995-07       Impact factor: 4.562

9.  Nuclear-mitochondrial epistasis for fitness in Saccharomyces cerevisiae.

Authors:  Clifford Zeyl; Bethany Andreson; Emily Weninck
Journal:  Evolution       Date:  2005-04       Impact factor: 3.694

10.  Effect of teosinte cytoplasmic genomes on maize phenotype.

Authors:  James O Allen
Journal:  Genetics       Date:  2005-02       Impact factor: 4.562
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  7 in total

1.  Hierarchical nuclear and cytoplasmic genetic architectures for plant growth and defense within Arabidopsis.

Authors:  Bindu Joseph; Jason A Corwin; Tobias Züst; Baohua Li; Majid Iravani; Gabriela Schaepman-Strub; Lindsay A Turnbull; Daniel J Kliebenstein
Journal:  Plant Cell       Date:  2013-06-07       Impact factor: 11.277

Review 2.  Mitochondrial-nuclear epistasis: implications for human aging and longevity.

Authors:  Gregory J Tranah
Journal:  Ageing Res Rev       Date:  2010-06-25       Impact factor: 10.895

3.  Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field.

Authors:  Fabrice Roux; Tristan Mary-Huard; Elise Barillot; Estelle Wenes; Lucy Botran; Stéphanie Durand; Romain Villoutreix; Marie-Laure Martin-Magniette; Christine Camilleri; Françoise Budar
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-15       Impact factor: 11.205

4.  Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome.

Authors:  Bindu Joseph; Jason A Corwin; Baohua Li; Suzi Atwell; Daniel J Kliebenstein
Journal:  Elife       Date:  2013-10-08       Impact factor: 8.140

Review 5.  Genome barriers between nuclei and mitochondria exemplified by cytoplasmic male sterility.

Authors:  Sota Fujii; Kinya Toriyama
Journal:  Plant Cell Physiol       Date:  2008-07-14       Impact factor: 4.927

6.  Whole genome resequencing of Botrytis cinerea isolates identifies high levels of standing diversity.

Authors:  Susanna Atwell; Jason A Corwin; Nicole E Soltis; Anushryia Subedy; Katherine J Denby; Daniel J Kliebenstein
Journal:  Front Microbiol       Date:  2015-09-24       Impact factor: 5.640

7.  Statistical dissection of cyto-nuclear epistasis subject to genomic imprinting in line crosses.

Authors:  Tao He; Jian Sa; Ping-Shou Zhong; Yuehua Cui
Journal:  PLoS One       Date:  2014-03-18       Impact factor: 3.240
  7 in total

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