Literature DB >> 17720484

Analysis of small RNA profiles during development.

Toshiaki Watanabe1, Yasushi Totoki, Hiroyuki Sasaki, Naojiro Minami, Hiroshi Imai.   

Abstract

Small RNAs ranging in size between 20 and 32 nt regulate gene expression through chromatin modification, mRNA degradation, and translational repression. Three major classes of small RNAs have been characterized: microRNAs (miRNAs), short interfering RNAs (siRNAs), and Piwi-interacting RNAs (piRNAs). miRNAs are expressed in a developmentally regulated and tissue-specific manner and are involved in development and cell differentiation. siRNAs are mainly involved in defense against transposons and viruses. piRNAs are expressed in germ cells and stem cells and are thought to repress transposition of retrotransposons. In this chapter, we describe the methods of small RNA cloning, annotation and classification, and their expression analysis during development.

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Year:  2007        PMID： 17720484     DOI： 10.1016/S0076-6879(07)27009-0

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


  6 in total

1.  Mouse GTSF1 is an essential factor for secondary piRNA biogenesis.

Authors:  Takuji Yoshimura; Toshiaki Watanabe; Satomi Kuramochi-Miyagawa; Noriaki Takemoto; Yusuke Shiromoto; Akihiko Kudo; Masami Kanai-Azuma; Fumi Tashiro; Satsuki Miyazaki; Ami Katanaya; Shinichiro Chuma; Jun-Ichi Miyazaki
Journal:  EMBO Rep       Date:  2018-02-07       Impact factor: 8.807

2.  MITOPLD is a mitochondrial protein essential for nuage formation and piRNA biogenesis in the mouse germline.

Authors:  Toshiaki Watanabe; Shinichiro Chuma; Yasuhiro Yamamoto; Satomi Kuramochi-Miyagawa; Yasushi Totoki; Atsushi Toyoda; Yuko Hoki; Asao Fujiyama; Tatsuhiro Shibata; Takashi Sado; Toshiaki Noce; Toru Nakano; Norio Nakatsuji; Haifan Lin; Hiroyuki Sasaki
Journal:  Dev Cell       Date:  2011-03-15       Impact factor: 12.270

3.  Common microRNA signatures in cardiac hypertrophic and atrophic remodeling induced by changes in hemodynamic load.

Authors:  Ali El-Armouche; Alexander Peter Schwoerer; Christiane Neuber; Julius Emons; Julius Emmons; Daniel Biermann; Thomas Christalla; Adam Grundhoff; Thomas Eschenhagen; Wolfram Hubertus Zimmermann; Heimo Ehmke
Journal:  PLoS One       Date:  2010-12-09       Impact factor: 3.240

Review 4.  Plant small RNAs: biogenesis, mode of action and their roles in abiotic stresses.

Authors:  Praveen Guleria; Monika Mahajan; Jyoti Bhardwaj; Sudesh Kumar Yadav
Journal:  Genomics Proteomics Bioinformatics       Date:  2011-12       Impact factor: 7.691

5.  Targeted gene silencing in mouse germ cells by insertion of a homologous DNA into a piRNA generating locus.

Authors:  Yasuhiro Yamamoto; Toshiaki Watanabe; Yuko Hoki; Kenjiro Shirane; Yufeng Li; Kenji Ichiiyanagi; Satomi Kuramochi-Miyagawa; Atsushi Toyoda; Asao Fujiyama; Masayuki Oginuma; Hitomi Suzuki; Takashi Sado; Toru Nakano; Hiroyuki Sasaki
Journal:  Genome Res       Date:  2012-11-06       Impact factor: 9.043

6.  Identification of an imprinted gene cluster in the X-inactivation center.

Authors:  Shin Kobayashi; Yasushi Totoki; Miki Soma; Kazuya Matsumoto; Yoshitaka Fujihara; Atsushi Toyoda; Yoshiyuki Sakaki; Masaru Okabe; Fumitoshi Ishino
Journal:  PLoS One       Date:  2013-08-06       Impact factor: 3.240
  6 in total

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