Literature DB >> 17714463

Cross-species transferability of microsatellite markers from six aphid (Hemiptera: Aphididae) species and their use for evaluating biotypic diversity in two cereal aphids.

Y Weng1, P Azhaguvel, G J Michels, J C Rudd.   

Abstract

The abundance and distribution of microsatellites, or simple sequence repeats (SSRs) were explored in the expressed sequence tag (EST) and genomic sequences of the pea aphid, Acyrthosiphon pisum (Harris), and the green peach aphid, Myzus persicae (Sulzer). A total of 108 newly developed, together with 40 published, SSR markers were investigated for their cross-species transferability among six aphid species. Genetic diversity among six greenbug, Schizaphis graminum (Rondani) and two Russian wheat aphid, Diuraphis noxia (Kurdjumov) biotypes was further examined with 67 transferable SSRs. It was found that the pea aphid genome is abundant in SSRs with a unique frequency and distribution of SSR motifs. Cross-species transferability of EST-derived SSRs is dependent on phylogenetic closeness between SSR donor and target species, but is higher than that of genomic SSRs. Neighbor-joining analysis of SSR data revealed host-adapted genetic divergence as well as regional differentiation of greenbug biotypes. The two Russian wheat aphid biotypes are genetically as diverse as the greenbug ones although it was introduced into the USA only 20 years ago. This is the first report of large-scale development of SSR markers in aphids, which are expected to have wide applications in aphid genetic, ecological and evolutionary studies.

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Year:  2007        PMID: 17714463     DOI: 10.1111/j.1365-2583.2007.00757.x

Source DB:  PubMed          Journal:  Insect Mol Biol        ISSN: 0962-1075            Impact factor:   3.585


  7 in total

1.  Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.).

Authors:  Pablo F Cavagnaro; Douglas A Senalik; Luming Yang; Philipp W Simon; Timothy T Harkins; Chinnappa D Kodira; Sanwen Huang; Yiqun Weng
Journal:  BMC Genomics       Date:  2010-10-15       Impact factor: 3.969

2.  Mining and characterization of sequence tagged microsatellites from the brown planthopper Nilaparvata lugens.

Authors:  Jing-Tao Sun; Yan-Kai Zhang; Cheng Ge; Xiao-Yue Hong
Journal:  J Insect Sci       Date:  2011       Impact factor: 1.857

3.  Development and characterization of 18 novel EST-SSRs from the western flower Thrips, Frankliniella occidentalis (Pergande).

Authors:  Xian-Ming Yang; Jing-Tao Sun; Xiao-Feng Xue; Wen-Chao Zhu; Xiao-Yue Hong
Journal:  Int J Mol Sci       Date:  2012-03-05       Impact factor: 6.208

4.  Development of SSR Markers and Genetic Diversity in White Birch (Betula platyphylla).

Authors:  Wei Hao; Shengji Wang; Huajing Liu; Boru Zhou; Xinwang Wang; Tingbo Jiang
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

5.  Genome wide characterization of short tandem repeat markers in sweet orange (Citrus sinensis).

Authors:  Manosh Kumar Biswas; Qiang Xu; Christoph Mayer; Xiuxin Deng
Journal:  PLoS One       Date:  2014-08-22       Impact factor: 3.240

6.  APMicroDB: A microsatellite database of Acyrthosiphon pisum.

Authors:  Ritika Bishnoi; Deepak Singla
Journal:  Genom Data       Date:  2017-03-30

Review 7.  Microsatellites in Pursuit of Microbial Genome Evolution.

Authors:  Abdullah F Saeed; Rongzhi Wang; Shihua Wang
Journal:  Front Microbiol       Date:  2016-01-05       Impact factor: 5.640

  7 in total

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