Literature DB >> 17713907

Ligand-directed dynamics of adenine riboswitch conformers.

Saman Eskandari1, Oksana Prychyna, Jessica Leung, Dijana Avdic, Melanie A O'Neill.   

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Year:  2007        PMID： 17713907     DOI： 10.1021/ja073159l

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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  14 in total

1.  RNA dynamics: it is about time.

Authors:  Hashim M Al-Hashimi; Nils G Walter
Journal:  Curr Opin Struct Biol       Date:  2008-06-09       Impact factor: 6.809

2.  MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitch.

Authors:  Monika Sharma; Gopalakrishnan Bulusu; Abhijit Mitra
Journal:  RNA       Date:  2009-07-22       Impact factor: 4.942

3.  Role of the adenine ligand on the stabilization of the secondary and tertiary interactions in the adenine riboswitch.

Authors:  U Deva Priyakumar; Alexander D MacKerell
Journal:  J Mol Biol       Date:  2009-12-21       Impact factor: 5.469

Review 4.  Structure and mechanism of purine-binding riboswitches.

Authors:  Robert T Batey
Journal:  Q Rev Biophys       Date:  2012-07-31       Impact factor: 5.318

Review 5.  The long and the short of riboswitches.

Authors:  Alexander Serganov
Journal:  Curr Opin Struct Biol       Date:  2009-03-19       Impact factor: 6.809

6.  Loop-loop interaction in an adenine-sensing riboswitch: a molecular dynamics study.

Authors:  Olof Allnér; Lennart Nilsson; Alessandra Villa
Journal:  RNA       Date:  2013-05-28       Impact factor: 4.942

7.  Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitch.

Authors:  Alessandra Villa; Jens Wöhnert; Gerhard Stock
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

8.  Multivector fluorescence analysis of the xpt guanine riboswitch aptamer domain and the conformational role of guanine.

Authors:  Michael D Brenner; Mary S Scanlan; Michelle K Nahas; Taekjip Ha; Scott K Silverman
Journal:  Biochemistry       Date:  2010-03-02       Impact factor: 3.162

Review 9.  The purine riboswitch as a model system for exploring RNA biology and chemistry.

Authors:  Ely B Porter; Joan G Marcano-Velázquez; Robert T Batey
Journal:  Biochim Biophys Acta       Date:  2014-02-28

10.  Single-molecule chemical denaturation of riboswitches.

Authors:  Paul A Dalgarno; Jorge Bordello; Rhodri Morris; Patrick St-Pierre; Audrey Dubé; Ifor D W Samuel; Daniel A Lafontaine; J Carlos Penedo
Journal:  Nucleic Acids Res       Date:  2013-02-27       Impact factor: 16.971
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