Literature DB >> 17711326

SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides.

Maria Fälth1, Mikhail M Savitski, Michael L Nielsen, Frank Kjeldsen, Per E Andren, Roman A Zubarev.   

Abstract

A database of high-mass accuracy tryptic peptides has been created. The database contains 15 897 unique, annotated MS/MS spectra. It is possible to search for peptides according to their mass, number of missed cleavages, and sequence motifs. All of the data contained in the database is downloadable, and each spectrum can be visualized. An example is presented of how the database can be used for studying peptide fragmentation. Fragmentation of different types of missed cleaved peptides has been studied, and the results can be used to improve identification of these types of peptides.

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Year:  2007        PMID： 17711326     DOI： 10.1021/pr070345h

Source DB:  PubMed          Journal:  J Proteome Res        ISSN： 1535-3893            Impact factor:   4.466


  13 in total

1.  The use of chromium(III) to supercharge peptides by protonation at low basicity sites.

Authors:  Changgeng Feng; Juliette J Commodore; Carolyn J Cassady
Journal:  J Am Soc Mass Spectrom       Date:  2014-11-14       Impact factor: 3.109

2.  Sequence scrambling in shotgun proteomics is negligible.

Authors:  Anton A Goloborodko; Mikhail V Gorshkov; David M Good; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-15       Impact factor: 3.109

3.  Dissociation channel dependence on peptide size observed in electron capture dissociation of tryptic peptides.

Authors:  Guillaume van der Rest; Renjie Hui; Gilles Frison; Julia Chamot-Rooke
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-04       Impact factor: 3.109

4.  MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions.

Authors:  Jennifer A Mead; Luca Bianco; Vanessa Ottone; Chris Barton; Richard G Kay; Kathryn S Lilley; Nicholas J Bond; Conrad Bessant
Journal:  Mol Cell Proteomics       Date:  2008-11-15       Impact factor: 5.911

5.  Precision proteomics: the case for high resolution and high mass accuracy.

Authors:  Matthias Mann; Neil L Kelleher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-25       Impact factor: 11.205

6.  Electron capture/transfer versus collisionally activated/induced dissociations: solo or duet?

Authors:  Roman A Zubarev; Alexander R Zubarev; Mikhail M Savitski
Journal:  J Am Soc Mass Spectrom       Date:  2008-03-28       Impact factor: 3.109

7.  N-terminal peptide sequence repetition influences the kinetics of backbone fragmentation: a manifestation of the Jahn-Teller effect?

Authors:  David M Good; Hongqian Yang; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2013-04-30       Impact factor: 3.109

8.  Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra.

Authors:  A R Ledvina; M M Savitski; A R Zubarev; D M Good; J J Coon; R A Zubarev
Journal:  Anal Chem       Date:  2011-09-28       Impact factor: 6.986

Review 9.  Proteomics of plant pathogenic fungi.

Authors:  Raquel González-Fernández; Elena Prats; Jesús V Jorrín-Novo
Journal:  J Biomed Biotechnol       Date:  2010-05-27

Review 10.  Understanding Leishmania parasites through proteomics and implications for the clinic.

Authors:  Shyam Sundar; Bhawana Singh
Journal:  Expert Rev Proteomics       Date:  2018-05-02       Impact factor: 3.940
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