Literature DB >> 17700859

A genome-scale, constraint-based approach to systems biology of human metabolism.

Monica L Mo1, Neema Jamshidi, Bernhard Ø Palsson.   

Abstract

The recent sequencing and annotation of the human genome enables a new era in biomedicine that will be based on an interdisciplinary, systemic approach to the elucidation and treatment of human disease. Reconstruction of genome-scale metabolic networks is an important part of this approach since networks represent the integration of diverse biological data such as genome annotations, high-throughput data, and legacy biochemical knowledge. This article will describe Homo sapiens Recon 1, a functionally tested, genome-scale reconstruction of human cellular metabolism, and its capabilities for facilitating the understanding of physiological and disease metabolic states.

Entities:  

Mesh:

Year:  2007        PMID: 17700859     DOI: 10.1039/b705597h

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  21 in total

1.  C4GEM, a genome-scale metabolic model to study C4 plant metabolism.

Authors:  Cristiana Gomes de Oliveira Dal'Molin; Lake-Ee Quek; Robin William Palfreyman; Stevens Michael Brumbley; Lars Keld Nielsen
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

2.  Adding biotic complexity alters the metabolic benefits of mutualism.

Authors:  William R Harcombe; Alex Betts; Jason W Shapiro; Christopher J Marx
Journal:  Evolution       Date:  2016-06-24       Impact factor: 3.694

Review 3.  Mechanistic systems modeling to guide drug discovery and development.

Authors:  Brian J Schmidt; Jason A Papin; Cynthia J Musante
Journal:  Drug Discov Today       Date:  2012-09-19       Impact factor: 7.851

4.  Synthetic dosage lethality in the human metabolic network is highly predictive of tumor growth and cancer patient survival.

Authors:  Wout Megchelenbrink; Rotem Katzir; Xiaowen Lu; Eytan Ruppin; Richard A Notebaart
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-14       Impact factor: 11.205

5.  Responses to light intensity in a genome-scale model of rice metabolism.

Authors:  Mark G Poolman; Sudip Kundu; Rahul Shaw; David A Fell
Journal:  Plant Physiol       Date:  2013-05-02       Impact factor: 8.340

6.  A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola.

Authors:  Gavin H Thomas; Jeremy Zucker; Sandy J Macdonald; Anatoly Sorokin; Igor Goryanin; Angela E Douglas
Journal:  BMC Syst Biol       Date:  2009-02-21

7.  Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli.

Authors:  Rishi Jain; Ranjan Srivastava
Journal:  BMC Syst Biol       Date:  2009-12-30

8.  Annotation-based inference of transporter function.

Authors:  Thomas J Lee; Ian Paulsen; Peter Karp
Journal:  Bioinformatics       Date:  2008-07-01       Impact factor: 6.937

9.  Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases.

Authors:  Douglas B Kell
Journal:  BMC Med Genomics       Date:  2009-01-08       Impact factor: 3.063

10.  Metabolic states following accumulation of intracellular aggregates: implications for neurodegenerative diseases.

Authors:  Alexei Vazquez
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.