Literature DB >> 17690003

Geometrical regularization of displacement fields for histological image registration.

Alain Pitiot1, Alexandre Guimond.   

Abstract

This article tackles the registration of 2-D biomedical images (histological sections, autoradiographs, cryosections, etc.). Our goal is to adequately match anatomical features of interest without inducing biologically improbable tissue distortions. We observe that the large variety of registration applications--3-D volume reconstruction, multimodal molecular mapping, etc.--induce a no less diverse set of requirements in terms of accuracy and robustness. In turn, these directly translate into regularization constraints on the deformation model, which should ideally be specifiable by the user. We propose an adaptive regularization approach where the rigidity constraints are informed by the registration application at hand and whose support is controlled by the geometry of the images to be registered. For each site of a sparse lattice over which a displacement field has been computed, our algorithm estimates, in a robust fashion, a rigid or affine transformation within a circular neighbourhood cut to fit the local geometry around the site. We investigate the behaviour of this technique and discuss its sensitivity to the rigidity parameter.

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Year:  2007        PMID: 17690003     DOI: 10.1016/j.media.2007.06.007

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  9 in total

1.  A Gauss-Seidel iteration scheme for reference-free 3-D histological image reconstruction.

Authors:  Simone Gaffling; Volker Daum; Stefan Steidl; Andreas Maier; Harald Kostler; Joachim Hornegger
Journal:  IEEE Trans Med Imaging       Date:  2014-10-08       Impact factor: 10.048

2.  Fast cross-staining alignment of gigapixel whole slide images with application to prostate cancer and breast cancer analysis.

Authors:  Ching-Wei Wang; Yu-Ching Lee; Muhammad-Adil Khalil; Kuan-Yu Lin; Cheng-Ping Yu; Huang-Chun Lien
Journal:  Sci Rep       Date:  2022-07-08       Impact factor: 4.996

3.  Atlas-guided correction of brain histology distortion.

Authors:  Xi Qiu; Lin Shi; Tony Pridmore; Alain Pitiot; Defeng Wang
Journal:  J Pathol Inform       Date:  2012-01-19

4.  Robust image registration of biological microscopic images.

Authors:  Ching-Wei Wang; Shuk-Man Ka; Ann Chen
Journal:  Sci Rep       Date:  2014-08-13       Impact factor: 4.379

5.  Possum-A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections.

Authors:  Piotr Majka; Daniel K Wójcik
Journal:  Neuroinformatics       Date:  2016-07

6.  3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging.

Authors:  Thomy Mertzanidou; John H Hipwell; Sara Reis; David J Hawkes; Babak Ehteshami Bejnordi; Mehmet Dalmis; Suzan Vreemann; Bram Platel; Jeroen van der Laak; Nico Karssemeijer; Meyke Hermsen; Peter Bult; Ritse Mann
Journal:  Med Phys       Date:  2017-03       Impact factor: 4.071

7.  Fully automatic and robust 3D registration of serial-section microscopic images.

Authors:  Ching-Wei Wang; Eric Budiman Gosno; Yen-Sheng Li
Journal:  Sci Rep       Date:  2015-10-09       Impact factor: 4.379

8.  Integration of ultra-high field MRI and histology for connectome based research of brain disorders.

Authors:  Shan Yang; Zhengyi Yang; Karin Fischer; Kai Zhong; Jörg Stadler; Frank Godenschweger; Johann Steiner; Hans-Jochen Heinze; Hans-Gert Bernstein; Bernhard Bogerts; Christian Mawrin; David C Reutens; Oliver Speck; Martin Walter
Journal:  Front Neuroanat       Date:  2013-09-27       Impact factor: 3.856

9.  Registration of 3D fetal neurosonography and MRI.

Authors:  Maria Kuklisova-Murgasova; Amalia Cifor; Raffaele Napolitano; Aris Papageorghiou; Gerardine Quaghebeur; Mary A Rutherford; Joseph V Hajnal; J Alison Noble; Julia A Schnabel
Journal:  Med Image Anal       Date:  2013-07-30       Impact factor: 8.545

  9 in total

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