Literature DB >> 17688327

Hybrid approach for free energy calculations with high-level methods: application to the SN2 reaction of CHCl3 and OH- in water.

Marat Valiev1, Bruce C Garrett, Ming-Kang Tsai, Karol Kowalski, Shawn M Kathmann, Gregory K Schenter, Michel Dupuis.   

Abstract

We present an approach to calculate the free energy profile along a condensed-phase reaction path based on high-level electronic structure methods for the reactive region. The bulk of statistical averaging is shifted toward less expensive descriptions by using a hierarchy of representations that includes molecular mechanics, density functional theory, and coupled cluster theories. As an application of this approach we study the reaction of CHCl3 with OH- in aqueous solution.

Entities:  

Year:  2007        PMID: 17688327     DOI: 10.1063/1.2768343

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  3 in total

1.  Theoretical investigation of the enzymatic phosphoryl transfer of β-phosphoglucomutase: revisiting both steps of the catalytic cycle.

Authors:  Brigitta Elsässer; Silvia Dohmeier-Fischer; Gregor Fels
Journal:  J Mol Model       Date:  2012-01-12       Impact factor: 1.810

2.  Distinct Roles of Catalytic Cysteine and Histidine in the Protease and Ligase Mechanisms of Human Legumain As Revealed by DFT-Based QM/MM Simulations.

Authors:  Brigitta Elsässer; Florian B Zauner; Johann Messner; Wai Tuck Soh; Elfriede Dall; Hans Brandstetter
Journal:  ACS Catal       Date:  2017-07-14       Impact factor: 13.084

3.  Multi-level Quantum Mechanics and Molecular Mechanics Study of Ring Opening Process of Guanine Damage by Hydroxyl Radical in Aqueous Solution.

Authors:  Peng Liu; Qiong Wang; Meixing Niu; Dunyou Wang
Journal:  Sci Rep       Date:  2017-08-10       Impact factor: 4.379

  3 in total

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