Literature DB >> 17687277

Crystallography: crystallographic evidence for deviating C3b structure.

Bert J C Janssen1, Randy J Read, Axel T Brünger, Piet Gros.   

Abstract

Activation of the protein C3 into C3b in the complement pathway is a crucial step in the complement immune response against pathogenic, immunogenic and apoptotic particles. Ajees et al. describe a crystal structure for C3b that deviates from the one reported by Janssen et al. and by Wiesmann et al.. We have reanalysed the data deposited by Ajees et al. and have discovered features that are inconsistent with the known physical properties of macromolecular structures and their diffraction data. Our findings therefore call into question the crystal structure for C3b reported by Ajees et al..

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Year:  2007        PMID: 17687277      PMCID: PMC2504710          DOI: 10.1038/nature06102

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  10 in total

1.  X-ray structure of pyruvate formate-lyase in complex with pyruvate and CoA. How the enzyme uses the Cys-418 thiyl radical for pyruvate cleavage.

Authors:  Andreas Becker; Wolfgang Kabsch
Journal:  J Biol Chem       Date:  2002-08-05       Impact factor: 5.157

2.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

3.  Rigid protein motion as a model for crystallographic temperature factors.

Authors:  J Kuriyan; W I Weis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

4.  Likelihood-enhanced fast translation functions.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Laurent C Storoni; Randy J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

5.  Structure of C3b reveals conformational changes that underlie complement activity.

Authors:  Bert J C Janssen; Agni Christodoulidou; Andrew McCarthy; John D Lambris; Piet Gros
Journal:  Nature       Date:  2006-10-15       Impact factor: 49.962

6.  Structure of C3b in complex with CRIg gives insights into regulation of complement activation.

Authors:  Christian Wiesmann; Kenneth J Katschke; JianPing Yin; Karim Y Helmy; Micah Steffek; Wayne J Fairbrother; Scott A McCallum; Lizette Embuscado; Laura DeForge; Philip E Hass; Menno van Lookeren Campagne
Journal:  Nature       Date:  2006-10-15       Impact factor: 49.962

7.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

8.  Structures of complement component C3 provide insights into the function and evolution of immunity.

Authors:  Bert J C Janssen; Eric G Huizinga; Hans C A Raaijmakers; Anja Roos; Mohamed R Daha; Kristina Nilsson-Ekdahl; Bo Nilsson; Piet Gros
Journal:  Nature       Date:  2005-09-22       Impact factor: 49.962

9.  The structure of complement C3b provides insights into complement activation and regulation.

Authors:  A Abdul Ajees; K Gunasekaran; John E Volanakis; Sthanam V L Narayana; Girish J Kotwal; H M Krishna Murthy
Journal:  Nature       Date:  2006-10-15       Impact factor: 49.962

10.  Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures.

Authors:  J S Jiang; A T Brünger
Journal:  J Mol Biol       Date:  1994-10-14       Impact factor: 5.469

  10 in total
  22 in total

1.  Convertase inhibitory properties of Staphylococcal extracellular complement-binding protein.

Authors:  Ilse Jongerius; Brandon L Garcia; Brian V Geisbrecht; Jos A G van Strijp; Suzan H M Rooijakkers
Journal:  J Biol Chem       Date:  2010-03-19       Impact factor: 5.157

2.  Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin.

Authors:  Ivan Shabalin; Zbigniew Dauter; Mariusz Jaskolski; Wladek Minor; Alexander Wlodawer
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-08-28

Review 3.  Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2007-11-23       Impact factor: 5.542

4.  Sorting the chaff from the wheat at the PDB.

Authors:  Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

5.  RosettaHoles: rapid assessment of protein core packing for structure prediction, refinement, design, and validation.

Authors:  Will Sheffler; David Baker
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

6.  Fraud rocks protein community.

Authors:  Brendan Borrell
Journal:  Nature       Date:  2009-12-24       Impact factor: 49.962

Review 7.  Complement component C3 - The "Swiss Army Knife" of innate immunity and host defense.

Authors:  Daniel Ricklin; Edimara S Reis; Dimitrios C Mastellos; Piet Gros; John D Lambris
Journal:  Immunol Rev       Date:  2016-11       Impact factor: 12.988

8.  Dynamic structural changes during complement C3 activation analyzed by hydrogen/deuterium exchange mass spectrometry.

Authors:  Michael C Schuster; Daniel Ricklin; Krisztián Papp; Kathleen S Molnar; Stephen J Coales; Yoshitomo Hamuro; Georgia Sfyroera; Hui Chen; Michael S Winters; John D Lambris
Journal:  Mol Immunol       Date:  2008-05-05       Impact factor: 4.407

9.  PROSESS: a protein structure evaluation suite and server.

Authors:  Mark Berjanskii; Yongjie Liang; Jianjun Zhou; Peter Tang; Paul Stothard; You Zhou; Joseph Cruz; Cam MacDonell; Guohui Lin; Paul Lu; David S Wishart
Journal:  Nucleic Acids Res       Date:  2010-05-11       Impact factor: 16.971

10.  PDBWiki: added value through community annotation of the Protein Data Bank.

Authors:  Henning Stehr; Jose M Duarte; Michael Lappe; Jong Bhak; Dan M Bolser
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

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