Literature DB >> 17685224

[Homologous DNA transferase RecA: functional activities and the search for homology by recombining DNA molecules].

V A Lantsov.   

Abstract

Bacterial RecA protein is a prototype of ATP-dependent homologous recombinases found ubiquitously from bacteriophages up to human beings. When RecA filament is forming on single-stranded DNA in the presence of ATP, it initiates the strand exchange reaction with homologous double-stranded DNA. Among three phases of the reaction (the search for homology, the three-stranded structure annealing in conjunction with the switch of pairing, and the strand displacement) the first one is the most enigmatic and least studied. As commonly recognized, this phase is directed by a special (stretched) filament structure and does not required any additional consumption of energy in ATP hydrolysis. The novel approaches in the study of strand exchange reaction, using short oligonucleotides as DNA substrates and sensitive methods for a real-time monitoring of the reaction suggest that all three phases of the reaction depend on the ATP hydrolysis.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17685224     DOI: 10.1134/s0026893307030132

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  24 in total

Review 1.  Possibilities of the method of step-by-step complication of ligand structure in studies of protein--nucleic acid interactions: mechanisms of functioning of some replication, repair, topoisomerization, and restriction enzymes.

Authors:  D V Bugreev; G A Nevinsky
Journal:  Biochemistry (Mosc)       Date:  1999-03       Impact factor: 2.487

2.  Thermodynamic, kinetic, and structural basis for recognition and repair of 8-oxoguanine in DNA by Fpg protein from Escherichia coli.

Authors:  Alexander A Ishchenko; Nataliya L Vasilenko; Olga I Sinitsina; Vitalyi I Yamkovoy; Olga S Fedorova; Kenneth T Douglas; Georgy A Nevinsky
Journal:  Biochemistry       Date:  2002-06-18       Impact factor: 3.162

3.  [The mechanism of specific cleavage of supercoiled DNA by human DNA topoisomerase I: the effect of ligand structure on the catalytic step of reaction].

Authors:  D V Bugreev; V N Buneva; G A Nevinskiĭ
Journal:  Mol Biol (Mosk)       Date:  2003 Mar-Apr

Review 4.  Recognition of damaged DNA by Escherichia coli Fpg protein: insights from structural and kinetic data.

Authors:  Dmitry O Zharkov; Alexander A Ishchenko; Kenneth T Douglas; Georgy A Nevinsky
Journal:  Mutat Res       Date:  2003-10-29       Impact factor: 2.433

Review 5.  [An important role for weak interactions during the recognition of long DNA and RNA molecules by enzymes].

Authors:  G A Nevinskiĭ
Journal:  Mol Biol (Mosk)       Date:  1995 Jan-Feb

6.  [Isolation of 8-oxoguanine-DNA-glycosylase from Escherichia coli and substrate specificity of of the enzyme].

Authors:  A A Ishchenko; N V Bulychev; D O Zharkov; G A Maksakova; F Johnson; G A Nevinskiĭ
Journal:  Mol Biol (Mosk)       Date:  1997 Mar-Apr

7.  Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy.

Authors:  J Heuser; J Griffith
Journal:  J Mol Biol       Date:  1989-12-05       Impact factor: 5.469

8.  Formation of nucleoprotein RecA filament on single-stranded DNA. Analysis by stepwise increase in ligand complexity.

Authors:  Irina P Bugreeva; Dmitry V Bugreev; Georgy A Nevinsky
Journal:  FEBS J       Date:  2005-06       Impact factor: 5.542

9.  The mechanism of recognition of templates by DNA polymerases from pro- and eukaryotes as revealed by affinity modification data.

Authors:  T I Kolocheva; G A Nevinsky; A S Levina; V V Khomov; O I Lavrik
Journal:  J Biomol Struct Dyn       Date:  1991-08

10.  Dynamic, thermodynamic, and kinetic basis for recognition and transformation of DNA by human immunodeficiency virus type 1 integrase.

Authors:  Dmitrii V Bugreev; Svetlana Baranova; Olga D Zakharova; Vincent Parissi; Cécile Desjobert; Enzo Sottofattori; Alessandro Balbi; Simon Litvak; Laura Tarrago-Litvak; Georgy A Nevinsky
Journal:  Biochemistry       Date:  2003-08-05       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.