Literature DB >> 17685218

[Chromatin and transcription regulation].

S V Razin.   

Abstract

Recent years are marked by drastic increase of interest in the role of chromatin in regulation of gene activity. In the seventies of the last century many studies were undertaken in order to identify different forms of histones involved in regulation on transcription. The results of these studies were conflicting. Determination of primary structures of the main forms of histones demonstrated the extreme conservativity of these proteins. Once the nucleosomes were discovered and their organization was studied, it became clear that nucleosome as a basic unit of chromatin is also highly conservative. This conception gradually changed in recent years. Many variant forms of nucleosomal core histones encoded by separate genes were discovered. In addition it was demonstrated that both canonical and variant forms of histones may by modified post-translationally in different ways. As a result, a possibility to assemble a number of different nucleosomal particles became evident. Furthermore, a clear correlation between certain modification of histones and DNA packaging in either active or inactive chromatin was established. Similarly, a correlation between formation of active (inactive) chromatin and incorporation of particular histone variants into nucleosomes was observed. To integrate all the above findings into the existing model of chromatin organization and functioning, the hypothesis of "histone code" was proposed. In this review the present state of our knowledge about chromatin organization and the role of this organization in transcription regulation will be discussed.

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Year:  2007        PMID: 17685218     DOI: 10.1134/s0026893307030053

Source DB:  PubMed          Journal:  Mol Biol (Mosk)        ISSN: 0026-8984


  64 in total

1.  Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.

Authors:  Donny D Licatalosi; Gabrielle Geiger; Michelle Minet; Stephanie Schroeder; Kate Cilli; J Bryan McNeil; David L Bentley
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

2.  Structural basis for phosphoserine-proline recognition by group IV WW domains.

Authors:  M A Verdecia; M E Bowman; K P Lu; T Hunter; J P Noel
Journal:  Nat Struct Biol       Date:  2000-08

Review 3.  RNA polymerase II conducts a symphony of pre-mRNA processing activities.

Authors:  Kenneth James Howe
Journal:  Biochim Biophys Acta       Date:  2002-09-13

4.  Functional interactions of RNA-capping enzyme with factors that positively and negatively regulate promoter escape by RNA polymerase II.

Authors:  Subhrangsu S Mandal; Chun Chu; Tadashi Wada; Hiroshi Handa; Aaron J Shatkin; Danny Reinberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-10       Impact factor: 11.205

5.  RNA polymerase II carboxy-terminal domain phosphorylation is required for cotranscriptional pre-mRNA splicing and 3'-end formation.

Authors:  Gregory Bird; Diego A R Zorio; David L Bentley
Journal:  Mol Cell Biol       Date:  2004-10       Impact factor: 4.272

6.  The human SWI/SNF subunit Brm is a regulator of alternative splicing.

Authors:  Eric Batsché; Moshe Yaniv; Christian Muchardt
Journal:  Nat Struct Mol Biol       Date:  2005-12-11       Impact factor: 15.369

7.  The CTD code.

Authors:  Stephen Buratowski
Journal:  Nat Struct Biol       Date:  2003-09

8.  Reciprocity between O-GlcNAc and O-phosphate on the carboxyl terminal domain of RNA polymerase II.

Authors:  F I Comer; G W Hart
Journal:  Biochemistry       Date:  2001-07-03       Impact factor: 3.162

9.  mRNA capping enzyme activity is coupled to an early transcription elongation.

Authors:  Hye-Jin Kim; Seok-Ho Jeong; Jeong-Hwa Heo; Su-Jin Jeong; Seong-Tae Kim; Hong-Duk Youn; Jeong-Whan Han; Hyang-Woo Lee; Eun-Jung Cho
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

10.  Structure of an mRNA capping enzyme bound to the phosphorylated carboxy-terminal domain of RNA polymerase II.

Authors:  Carme Fabrega; Vincent Shen; Stewart Shuman; Christopher D Lima
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

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  1 in total

1.  Experimental analysis of chromatin transcription activation during induction of morphogenesis in mature embryos of winter and spring wheats in the presence of a protein deacetylation inhibitor.

Authors:  E A Ivanova; G Kh Vafina; R S Ivanov
Journal:  Dokl Biol Sci       Date:  2008 Sep-Oct
  1 in total

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