Literature DB >> 17677881

Precision of genetic oscillators and clocks.

Luis G Morelli1, Frank Jülicher.   

Abstract

We develop a stochastic description of feedback oscillators in which functional molecules are produced by an assembly line consisting of many identical steps. The initiation rate of this assembly is regulated by its products via a negative feedback. This model is motivated by genetic oscillators such as circadian clocks. We show that precise oscillations of high quality are possible even when the number of product molecules is low and the fluctuations of amplitude are large. We discuss parameter values which can account for high quality oscillations as observed in single cells. Furthermore, we discuss effects of stochastic amplification steps on precision to account for translational bursting.

Mesh:

Year:  2007        PMID: 17677881     DOI: 10.1103/PhysRevLett.98.228101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Internal noise-sustained circadian rhythms in a Drosophila model.

Authors:  Qianshu Li; Xiufeng Lang
Journal:  Biophys J       Date:  2007-11-09       Impact factor: 4.033

2.  Modeling the resonant release of synaptic transmitter by hair cells as an example of biological oscillators with cooperative steps.

Authors:  Daniel Andor-Ardó; A J Hudspeth; Marcelo O Magnasco; Oreste Piro
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

3.  Multi-scale genetic dynamic modelling II: application to synthetic biology: an algorithmic Markov chain based approach.

Authors:  Markus Kirkilionis; Ulrich Janus; Luca Sbano
Journal:  Theory Biosci       Date:  2011-04-21       Impact factor: 1.919

Review 4.  Towards a physical understanding of developmental patterning.

Authors:  Jose Negrete; Andrew C Oates
Journal:  Nat Rev Genet       Date:  2021-05-10       Impact factor: 53.242

5.  On the dephasing of genetic oscillators.

Authors:  Davit A Potoyan; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

Review 6.  Noise in biology.

Authors:  Lev S Tsimring
Journal:  Rep Prog Phys       Date:  2014-01-20

7.  Stochastic resonances in a distributed genetic broadcasting system: the NFκB/IκB paradigm.

Authors:  Zhipeng Wang; Davit A Potoyan; Peter G Wolynes
Journal:  J R Soc Interface       Date:  2018-01       Impact factor: 4.118

8.  Diverse role of decoys on emergence and precision of oscillations in a biomolecular clock.

Authors:  Supravat Dey; Abhyudai Singh
Journal:  Biophys J       Date:  2021-11-11       Impact factor: 4.033

9.  Quantification of circadian rhythms in single cells.

Authors:  Pål O Westermark; David K Welsh; Hitoshi Okamura; Hanspeter Herzel
Journal:  PLoS Comput Biol       Date:  2009-11-26       Impact factor: 4.475

10.  Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock.

Authors:  Alexis B Webb; Iván M Lengyel; David J Jörg; Guillaume Valentin; Frank Jülicher; Luis G Morelli; Andrew C Oates
Journal:  Elife       Date:  2016-02-13       Impact factor: 8.140

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