Literature DB >> 17677383

Random numbers for large-scale distributed Monte Carlo simulations.

Heiko Bauke1, Stephan Mertens.   

Abstract

Monte Carlo simulations are one of the major tools in statistical physics, complex system science, and other fields, and an increasing number of these simulations is run on distributed systems like clusters or grids. This raises the issue of generating random numbers in a parallel, distributed environment. In this contribution we demonstrate that multiple linear recurrences in finite fields are an ideal method to produce high quality pseudorandom numbers in sequential and parallel algorithms. Their known weakness (failure of sampling points in high dimensions) can be overcome by an appropriate delinearization that preserves all desirable properties of the underlying linear sequence.

Entities:  

Year:  2007        PMID: 17677383     DOI: 10.1103/PhysRevE.75.066701

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for parameter identification.

Authors:  Li Ang Zhang; Alisa Urbano; Gilles Clermont; David Swigon; Ipsita Banerjee; Robert S Parker
Journal:  Comput Chem Eng       Date:  2017-11-11       Impact factor: 3.845

2.  Reproducible parallel inference and simulation of stochastic state space models using odin, dust, and mcstate.

Authors:  Richard G FitzJohn; Edward S Knock; Lilith K Whittles; Pablo N Perez-Guzman; Sangeeta Bhatia; Fernando Guntoro; Oliver J Watson; Charles Whittaker; Neil M Ferguson; Anne Cori; Marc Baguelin; John A Lees
Journal:  Wellcome Open Res       Date:  2021-06-10

3.  Optimizing agent-based transmission models for infectious diseases.

Authors:  Lander Willem; Sean Stijven; Engelbert Tijskens; Philippe Beutels; Niel Hens; Jan Broeckhove
Journal:  BMC Bioinformatics       Date:  2015-06-02       Impact factor: 3.169

4.  Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.

Authors:  Julien Dorier; Isaac Crespo; Anne Niknejad; Robin Liechti; Martin Ebeling; Ioannis Xenarios
Journal:  BMC Bioinformatics       Date:  2016-10-06       Impact factor: 3.169

5.  Model-Based Quantification of Left Ventricular Diastolic Function in Critically Ill Patients with Atrial Fibrillation from Routine Data: A Feasibility Study.

Authors:  Nicholas Kiefer; Maximilian J Oremek; Andreas Hoeft; Sven Zenker
Journal:  Comput Math Methods Med       Date:  2019-05-16       Impact factor: 2.238

6.  Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints.

Authors:  Victor Chardès; Massimo Vergassola; Aleksandra M Walczak; Thierry Mora
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-22       Impact factor: 12.779

7.  A cell size- and cell cycle-aware stochastic model for predicting time-dynamic gene network activity in individual cells.

Authors:  Ruijie Song; Weilin Peng; Ping Liu; Murat Acar
Journal:  BMC Syst Biol       Date:  2015-12-09
  7 in total

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