Literature DB >> 17677015

Conformations of confined biopolymers.

Frederik Wagner1, Gianluca Lattanzi, Erwin Frey.   

Abstract

Nanoscale and microscale confinement of biopolymers naturally occurs in cells and has been recently achieved in artificial structures designed for nanotechnological applications. Here, we present an extensive theoretical investigation of the conformations and shape of a biopolymer with varying stiffness confined to a narrow channel. Combining scaling arguments, analytical calculations, and Monte Carlo simulations, we identify various scaling regimes where master curves quantify the functional dependence of the polymer conformations on the chain stiffness and strength of confinement.

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Year:  2007        PMID: 17677015     DOI: 10.1103/PhysRevE.75.050902

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  10 in total

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Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

2.  Fluctuation modes of nanoconfined DNA.

Authors:  Alena Karpusenko; Joshua H Carpenter; Chunda Zhou; Shuang Fang Lim; Junhan Pan; Robert Riehn
Journal:  J Appl Phys       Date:  2012-01-17       Impact factor: 2.546

3.  Modeling the relaxation time of DNA confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2013-10-22       Impact factor: 2.800

4.  Characterization of single semiflexible filaments under geometric constraints.

Authors:  S Köster; J Kierfeld; T Pfohl
Journal:  Eur Phys J E Soft Matter       Date:  2008-04-21       Impact factor: 1.890

5.  Modeling the relaxation of internal DNA segments during genome mapping in nanochannels.

Authors:  Aashish Jain; Julian Sheats; Jeffrey G Reifenberger; Han Cao; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2016-10-13       Impact factor: 2.800

6.  Simulation of DNA Extension in Nanochannels.

Authors:  Yanwei Wang; Douglas R Tree; Kevin D Dorfman
Journal:  Macromolecules       Date:  2011-08-23       Impact factor: 5.985

7.  Segmentation and tracking of cytoskeletal filaments using open active contours.

Authors:  Matthew B Smith; Hongsheng Li; Tian Shen; Xiaolei Huang; Eddy Yusuf; Dimitrios Vavylonis
Journal:  Cytoskeleton (Hoboken)       Date:  2010-11

8.  Quantitative tube model for semiflexible polymer solutions.

Authors:  H Hinsch; J Wilhelm; E Frey
Journal:  Eur Phys J E Soft Matter       Date:  2007-09-03       Impact factor: 1.890

9.  Mobility of a semiflexible chain confined in a nanochannel.

Authors:  Douglas R Tree; Yanwei Wang; Kevin D Dorfman
Journal:  Phys Rev Lett       Date:  2012-06-01       Impact factor: 9.161

10.  Knot Factories with Helical Geometry Enhance Knotting and Induce Handedness to Knots.

Authors:  Renáta Rusková; Dušan Račko
Journal:  Polymers (Basel)       Date:  2022-10-07       Impact factor: 4.967

  10 in total

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