Literature DB >> 17676941

Characteristic distribution of L-tuple for DNA primary sequence.

Ying-Zhao Liu1, Yan-Chun Yang, Tian-Ming Wang.   

Abstract

We consider construction of a characteristic distribution of an L-tuple in a DNA sequence. The mathematical characteristic of the characteristic distribution is selected as invariant to characterize the L-tuple. With the invariant, we can perform the sequence comparison. The graphs of characteristic distributions of dinucleotide GC for the coding sequences of the first exon of beta-globin gene of eleven different species and the construction of phylogenetic tree of twenty four coronavirus genomes illustrate the utility of the approach.

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Year:  2007        PMID: 17676941     DOI: 10.1080/07391102.2007.10507158

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  3 in total

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Journal:  Protein J       Date:  2011-03       Impact factor: 2.371

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Journal:  J Theor Biol       Date:  2010-12-01       Impact factor: 2.691

3.  New method for comparing DNA primary sequences based on a discrimination measure.

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  3 in total

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