Literature DB >> 17676890

Dynamics and intrinsic statistical fluctuations of a gene switch.

David Lepzelter1, Keun-Young Kim, Jin Wang.   

Abstract

We studied a simple gene regulatory network, the toggle switch. Specifically, we examined the means and statistical fluctuations in numbers of proteins. We found that when omega, the ratio of rates of protein-gene unbinding to protein degradation, was between approximately 10(-3) and approximately 10, the fluctuations were much larger than those we would have expected from Poisson statistics. In addition, we examined characteristic time values for system relaxation and found both that they increased with omega and that they have significant phase transition effects, with a secondary time scale appearing near the boundary between bistable and other phases. Last, we discuss the bistability of the toggle switch.

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Year:  2007        PMID: 17676890     DOI: 10.1021/jp071735u

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  6 in total

1.  Stochastic expression dynamics of a transcription factor revealed by single-molecule noise analysis.

Authors:  Zach Hensel; Haidong Feng; Bo Han; Christine Hatem; Jin Wang; Jie Xiao
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

2.  Transcriptional control of noise in gene expression.

Authors:  Alvaro Sánchez; Jané Kondev
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

3.  Eddy current and coupled landscapes for nonadiabatic and nonequilibrium complex system dynamics.

Authors:  Kun Zhang; Masaki Sasai; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

4.  Quantifying Waddington landscapes and paths of non-adiabatic cell fate decisions for differentiation, reprogramming and transdifferentiation.

Authors:  Chunhe Li; Jin Wang
Journal:  J R Soc Interface       Date:  2013-10-16       Impact factor: 4.118

5.  Intrinsic noise, dissipation cost, and robustness of cellular networks: the underlying energy landscape of MAPK signal transduction.

Authors:  Saul Lapidus; Bo Han; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-17       Impact factor: 11.205

6.  Cell fate decision mediated by p53 pulses.

Authors:  Xiao-Peng Zhang; Feng Liu; Zhang Cheng; Wei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-15       Impact factor: 11.205

  6 in total

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