Literature DB >> 17672495

Model of peptide bond-aromatic ring interaction: correlated ab initio quantum chemical study.

Lada Bendová1, Petr Jurecka, Pavel Hobza, Jirí Vondrásek.   

Abstract

Aromatic ring-peptide bond interactions (modeled as benzene and formamide, N-methylformamide and N-methylacetamide) are studied by means of advanced computational chemistry methods: second-order Möller-Plesset (MP2), coupled-cluster single and double excitation model [CCSD(T)], and density functional theory with dispersion (DFT-D). The geometrical preferences of these interactions as well as their interaction energy content, in both parallel and T-shaped arrangements, are investigated. The stabilization energy reaches a value of over 5 kcal/mol for the N-methylformamide-benzene complex at the CCSD(T)/complete basis set (CBS) level. Decomposition of interaction energy by the DFT-symmetry-adapted perturbation treatment (SAPT) technique shows that the parallel and T-shaped arrangements, although similar in their total interaction energies, differ significantly in the proportion of electrostatic and dispersion terms.

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Year:  2007        PMID: 17672495     DOI: 10.1021/jp072859+

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Density functional theory studies of the extent of hole delocalization in one-electron oxidized adenine and guanine base stacks.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2011-03-21       Impact factor: 2.991

2.  PqsL uses reduced flavin to produce 2-hydroxylaminobenzoylacetate, a preferred PqsBC substrate in alkyl quinolone biosynthesis in Pseudomonas aeruginosa.

Authors:  Steffen Lorenz Drees; Simon Ernst; Benny Danilo Belviso; Nina Jagmann; Ulrich Hennecke; Susanne Fetzner
Journal:  J Biol Chem       Date:  2018-04-18       Impact factor: 5.157

3.  Peptide-biphenyl hybrid-capped AuNPs: stability and biocompatibility under cell culture conditions.

Authors:  Mona Connolly; Yolanda Pérez; Enrique Mann; Bernardo Herradón; María L Fernández-Cruz; José M Navas
Journal:  Nanoscale Res Lett       Date:  2013-07-06       Impact factor: 4.703

4.  Interactions of Urea-Based Inhibitors with Prostate-Specific Membrane Antigen for Boron Neutron Capture Therapy.

Authors:  Qiaoyu Hu; Kevin Padron; Daiki Hara; Junwei Shi; Alan Pollack; Rajeev Prabhakar; Wensi Tao
Journal:  ACS Omega       Date:  2021-12-01
  4 in total

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