Literature DB >> 17671974

Applications of isothermal titration calorimetry in RNA biochemistry and biophysics.

Andrew L Feig1.   

Abstract

Isothermal titration calorimetry (ITC) has been applied to the study of proteins for many years. Its use in the biophysical analysis of RNAs has lagged significantly behind its use in protein biochemistry, however, in part because of the relatively large samples required. As the instrumentation has become more sensitive, the ability to obtain high quality data on RNA folding and RNA ligand interactions has improved dramatically. This review provides an overview of the ITC experiment and describes recent work on RNA systems that have taken advantage of its versatility for the study of small molecule binding, protein binding, and the analysis of RNA folding. (c) 2007 Wiley Periodicals, Inc.

Mesh:

Substances:

Year:  2007        PMID: 17671974      PMCID: PMC2465469          DOI: 10.1002/bip.20816

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  65 in total

1.  The role of backlash in the "first injection anomaly" in isothermal titration calorimetry.

Authors:  Laura S Mizoue; Joel Tellinghuisen
Journal:  Anal Biochem       Date:  2004-03-01       Impact factor: 3.365

2.  Entropy-driven folding of an RNA helical junction: an isothermal titration calorimetric analysis of the hammerhead ribozyme.

Authors:  Peter J Mikulecky; Jennifer C Takach; Andrew L Feig
Journal:  Biochemistry       Date:  2004-05-18       Impact factor: 3.162

Review 3.  Heat capacity in proteins.

Authors:  Ninad V Prabhu; Kim A Sharp
Journal:  Annu Rev Phys Chem       Date:  2005       Impact factor: 12.703

Review 4.  Heat capacity changes associated with nucleic acid folding.

Authors:  Peter J Mikulecky; Andrew L Feig
Journal:  Biopolymers       Date:  2006-05       Impact factor: 2.505

Review 5.  Energetics of drug-DNA interactions.

Authors:  J B Chaires
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

Review 6.  Sensing the heat: the application of isothermal titration calorimetry to thermodynamic studies of biomolecular interactions.

Authors:  J E Ladbury; B Z Chowdhry
Journal:  Chem Biol       Date:  1996-10

7.  Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

Authors:  T Wiseman; S Williston; J F Brandts; L N Lin
Journal:  Anal Biochem       Date:  1989-05-15       Impact factor: 3.365

8.  The development of a continuous isothermal titration calorimetric method for equilibrium studies.

Authors:  Natalia Markova; Dan Hallén
Journal:  Anal Biochem       Date:  2004-08-01       Impact factor: 3.365

9.  Energetics of lesion recognition by a DNA repair protein: thermodynamic characterization of formamidopyrimidine-glycosylase (Fpg) interactions with damaged DNA duplexes.

Authors:  Conceição A S A Minetti; David P Remeta; Dmitry O Zharkov; G Eric Plum; Francis Johnson; Arthur P Grollman; Kenneth J Breslauer
Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

10.  Targeting the dimerization initiation site of HIV-1 RNA with aminoglycosides: from crystal to cell.

Authors:  Eric Ennifar; Jean-Christophe Paillart; Anne Bodlenner; Philippe Walter; Jean-Marc Weibel; Anne-Marie Aubertin; Patrick Pale; Philippe Dumas; Roland Marquet
Journal:  Nucleic Acids Res       Date:  2006-05-05       Impact factor: 16.971

View more
  27 in total

1.  Thermodynamic and kinetic analysis of an RNA kissing interaction and its resolution into an extended duplex.

Authors:  Nilshad Salim; Rajan Lamichhane; Rui Zhao; Tuhina Banerjee; Jane Philip; David Rueda; Andrew L Feig
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Monitoring of an RNA multistep folding pathway by isothermal titration calorimetry.

Authors:  Cédric Reymond; Martin Bisaillon; Jean-Pierre Perreault
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

3.  Improvement of sequence selectivity in triple helical recognition of RNA by phenylalanine-derived PNA.

Authors:  Thomas Zengeya; Artem Gindin; Eriks Rozners
Journal:  Artif DNA PNA XNA       Date:  2013-10-08

4.  Enthalpy array analysis of enzymatic and binding reactions.

Authors:  Michael I Recht; Dirk De Bruyker; Alan G Bell; Michal V Wolkin; Eric Peeters; Greg B Anderson; Anand R Kolatkar; Marshall W Bern; Peter Kuhn; Richard H Bruce; Frank E Torres
Journal:  Anal Biochem       Date:  2008-03-07       Impact factor: 3.365

Review 5.  Global analysis of riboswitches by small-angle X-ray scattering and calorimetry.

Authors:  Jinwei Zhang; Christopher P Jones; Adrian R Ferré-D'Amaré
Journal:  Biochim Biophys Acta       Date:  2014-04-24

6.  Identification of N6-methyladenosine reader proteins.

Authors:  Katherine I Zhou; Nian Liu; Tao Pan
Journal:  Methods       Date:  2017-04-26       Impact factor: 3.608

7.  Binding of plant alkaloids berberine and palmatine to serum albumins: a thermodynamic investigation.

Authors:  Asma Yasmeen Khan; Maidul Hossain; Gopinatha Suresh Kumar
Journal:  Mol Biol Rep       Date:  2012-10-12       Impact factor: 2.316

8.  Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.

Authors:  Julie L Fiore; Benedikt Kraemer; Felix Koberling; Rainer Edmann; David J Nesbitt
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

9.  Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA.

Authors:  Ann E Scheunemann; William D Graham; Franck A P Vendeix; Paul F Agris
Journal:  Nucleic Acids Res       Date:  2010-01-27       Impact factor: 16.971

10.  Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch.

Authors:  Nadia Kulshina; Thomas E Edwards; Adrian R Ferré-D'Amaré
Journal:  RNA       Date:  2009-11-30       Impact factor: 4.942

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.