| Literature DB >> 17669602 |
Nicola Decaro1, Viviana Mari, Costantina Desario, Marco Campolo, Gabriella Elia, Vito Martella, Grazia Greco, Francesco Cirone, Maria Loredana Colaianni, Paolo Cordioli, Canio Buonavoglia.
Abstract
A severe outbreak of enteric and respiratory disease associated with bovine coronavirus (BCoV) infection is described. The outbreak occurred in a dairy herd of southern Italy in the first decade of September 2006, when summer temperatures were still recorded, affecting calves, heifers and adult cows, with a marked decrease in milk production. By virus isolation and RT-PCR targeting the S gene, BCoV was identified as the etiological agent of the outbreak, whereas bacteriological, parasitological and toxicological investigations failed to detect other causes of disease. BCoV strains with 99-100% nucleotide identity in the S gene were isolated from nasal, ocular and rectal swabs, thus proving the absence of separate clusters of virus on the basis of tissue tropism. Sequence analysis of the haemagglutination-esterase and spike proteins of the strain detected in one rectal sample (339/06) showed a high genetic relatedness with recent BCoV isolates (98-99% amino acid identity), with several unique amino acid substitutions in the S protein. The BCoV outbreak described in this paper presents interesting aspects: (i) the occurrence of a severe form of disease in the warmer season; (ii) the simultaneous presence of respiratory and enteric disease; (iii) the involvement of young as well as adult cattle.Entities:
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Year: 2007 PMID: 17669602 PMCID: PMC7117129 DOI: 10.1016/j.vetmic.2007.06.024
Source DB: PubMed Journal: Vet Microbiol ISSN: 0378-1135 Impact factor: 3.293
Primers used for RT-PCR amplification and sequence analysis
| Primer | Sequence 5′–3′ | Sense | Position | Amplicon size (bp) |
|---|---|---|---|---|
| BCV-22001F | TAGACTTGAAATAGTTAAGCTTGGTG | + | 22001–22026 | 893 |
| BCV-22894R | AAATTAGCTTCACGAGCTATATATGC | − | 22868–22893 | |
| BCV-22769F | TATCGCAGCCTTACTTTTGTTAATG | + | 22769–22793 | 527 |
| BCV-23295R | CGAAAATAACAGTACGGGGGTTGACA | − | 23270–23295 | |
| BCV-23112F | TACCCTCTGGTAATTATTTAGCCATTTCA | + | 23112–23140 | 776 |
| BCV-23887R | TTCCCTTCAGTGCCATATTACGATATGT | − | 23860–23887 | |
| BCV-23510F | TATGATCCGCTACCAATTATTTTGCTTGGCA | + | 23510–23540 | 817 |
| BCV-24326R | ACAACACCAGTGTCTGTAAAATATGCA | − | 24300–24326 | |
| BCV-24182F | TAGAACTATGGCATTGGGATACAGGTGTTG | + | 24182–24211 | 1254 |
| BCV-25435R | TACACCTATCCCCTTGTAAACAAGAGTA | − | 25409–25435 | |
| BCV-25301F | ACTTAGTTGGCATAGGTGAGCACTGTTC | + | 25301–25328 | 851 |
| BCV-26151R | ACATGCTACATAATCACCACAGACAA | − | 26126–26151 | |
| BCV-26028F | TTTGTATGAAATTCAAATACCTTCAGAG | + | 26028–26055 | 877 |
| BCV-26904R | GTCTATCTGAGCTTGCGCTTCAAGAGCA | − | 26877–26904 | |
| BCV-26760F | TAAAATTCAAGCTGTTGTTAATGCAAAT | + | 26760–26787 | 1059 |
| BCV-27818R | GCTCGACCTAAATGGGTCTTATAATTAGA | − | 27791–27818 | |
Primers position is referred to the sequence of BCoV strain Mebus (accession: U00735).
Fig. 1Cytopathic effect induced on HRT cells by a BCoV strain isolated from the outbreak.
Detection of BCoV RNA and antibodies in affected animals
| Number | Animal | Rectal swab | Nasal swab | Ocular swab | BCoV ELISA OD values | |||
|---|---|---|---|---|---|---|---|---|
| VI | PCR | VI | PCR | VI | PCR | |||
| 1 | Cow | + | + | + | + | + | + | 0.281 |
| 2 | Cow | + | + | + | + | + | + | 0.219 |
| 3 | Cow | − | + | + | + | − | − | 0.417 |
| 4 | Cow | − | + | − | + | − | − | 0.374 |
| 5 | Cow | + | + | + | + | + | + | 0.231 |
| 6 | Cow | + | + | + | + | − | + | 0.138 |
| 7 | Cow | + | + | − | + | − | + | 0.344 |
| 8 | Cow | + | + | − | + | + | + | 0.198 |
| 9 | Cow | − | + | + | + | + | + | 0.282 |
| 10 | Cow | + | + | − | − | − | − | 0.435 |
| 11 | Heifer | + | + | − | − | − | − | 0.301 |
| 12 | Heifer | + | + | + | + | + | + | 0.481 |
| 13 | Heifer | + | + | + | + | − | + | 0.398 |
| 14 | Heifer | + | + | + | + | + | + | 0.229 |
| 15 | Heifer | + | + | + | + | − | − | 0.180 |
| 16 | Heifer | + | + | + | + | + | + | 0.427 |
| 17 | Heifer | + | + | + | + | + | + | 0.280 |
| 18 | Heifer | + | + | + | + | − | + | 0.114 |
| 19 | Heifer | + | + | + | + | − | + | 0.461 |
| 20 | Heifer | + | + | − | + | − | + | 0.277 |
| 21 | Calf | + | + | − | + | + | + | 0.455 |
| 22 | Calf | + | + | + | + | + | + | 0.299 |
| 23 | Calf | − | + | − | + | − | − | 0.300 |
| 24 | Calf | + | + | + | + | − | + | 0.098 |
| 25 | Calf | + | + | + | + | − | − | 0.109 |
| 26 | Calf | + | + | + | + | − | + | 0.425 |
| 27 | Calf | − | + | − | + | + | + | 0.397 |
| 28 | Calf | + | + | + | + | + | + | 0.255 |
| 29 | Calf | + | + | − | + | + | + | 0.303 |
| 30 | Calf | + | + | − | + | − | + | 0.242 |
| 5 | Cow | + | + | − | + | + | + | 0.358 |
| 6 | Cow | + | + | − | + | − | + | 0.176 |
| 8 | Cow | + | + | − | − | − | − | 0.211 |
| 11 | Heifer | − | + | − | + | − | + | 0.374 |
| 14 | Heifer | + | + | + | + | − | + | 0.329 |
| 16 | Heifer | − | + | − | + | − | + | 0.477 |
VI, virus isolation; PCR, RT-PCR amplification; +, positive; −, negative.
Animal sampled at the onset of clinical signs.
Animal displaying clinical signs after 15 days from the onset of the outbreak.
Amino acid identity (%) of BCoV reference strains to isolate 339/06 in the HE and S proteins
| BCoV strain | GenBank accession number | Aa identity (%) to isolate 339/06 | ||
|---|---|---|---|---|
| HE | S | HE | S | |
| Mebus | 98 | 97 | ||
| KWD10 | 98 | 98 | ||
| KWD9 | 98 | 98 | ||
| KWD8 | 98 | 98 | ||
| KWD7 | 98 | 98 | ||
| KWD6 | 99 | 98 | ||
| KWD5 | 99 | 98 | ||
| KWD4 | 98 | 98 | ||
| KWD3 | 98 | 98 | ||
| KWD2 | 98 | 98 | ||
| KWD1 | 99 | 98 | ||
| F15 | NA | ND | 97 | |
| KCD10 | 99 | 98 | ||
| KCD9 | 98 | 98 | ||
| KCD8 | 99 | 98 | ||
| KCD7 | 98 | 97 | ||
| BCoV-LUN | 99 | 98 | ||
| BCoV-ENT | 99 | 98 | ||
| BCV-Vaccine | NA | ND | 97 | |
| L9 | 98 | 97 | ||
| OK-0514-3 | 99 | 98 | ||
| LSU-94LSS-051-2 | 99 | 98 | ||
| LY-138 | 99 | 97 | ||
| Quebec | 98 | 96 | ||
| Alpaca | 99 | 97 | ||
| DB2 | 99 | 98 | ||
NA, not available; ND, not done.
Fig. 2Neighbor-joining trees based on spike (a) and haemagglutinin-esterase (b) proteins of bovine coronaviruses. Accession numbers of the strains used for phylogeny are reported in Table 3. HCoV OC43 (accession number NC_005147) was used as outgroup. Bootstrap values were calculated and are indicated at each node. The scale bars represent 0.5 (a) or 1 (b) substitutions per 100 sequence positions.