Literature DB >> 17668382

Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium.

Jukka T Salonen1, Pekka Uimari, Juha-Matti Aalto, Mia Pirskanen, Jari Kaikkonen, Boryana Todorova, Jelena Hyppönen, Veli-Pekka Korhonen, Janne Asikainen, Christopher Devine, Tomi-Pekka Tuomainen, Jan Luedemann, Matthias Nauck, Wolfgang Kerner, Richard H Stephens, John P New, William E Ollier, J Martin Gibson, Antony Payton, Michael A Horan, Neil Pendleton, Walt Mahoney, David Meyre, Jerôme Delplanque, Philippe Froguel, Oren Luzzatto, Benjamin Yakir, Ariel Darvasi.   

Abstract

Type 2 diabetes (T2D) is a common, polygenic chronic disease with high heritability. The purpose of this whole-genome association study was to discover novel T2D-associated genes. We genotyped 500 familial cases and 497 controls with >300,000 HapMap-derived tagging single-nucleotide-polymorphism (SNP) markers. When a stringent statistical correction for multiple testing was used, the only significant SNP was at TCF7L2, which has already been discovered and confirmed as a T2D-susceptibility gene. For a replication study, we selected 10 SNPs in six chromosomal regions with the strongest association (singly or as part of a haplotype) for retesting in an independent case-control set including 2,573 T2D cases and 2,776 controls. The most significant replicated result was found at the AHI1-LOC441171 gene region.

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Year:  2007        PMID: 17668382      PMCID: PMC1950819          DOI: 10.1086/520599

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  28 in total

1.  Data mining applied to linkage disequilibrium mapping.

Authors:  H T Toivonen; P Onkamo; K Vasko; V Ollikainen; P Sevon; H Mannila; M Herr; J Kere
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2.  Association between behavior-dependent cardiovascular risk factors and asymptomatic carotid atherosclerosis in a general population.

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Review 3.  Growing evidence for diabetes susceptibility genes from genome scan data.

Authors:  Mark I McCarthy
Journal:  Curr Diab Rep       Date:  2003-04       Impact factor: 4.810

4.  [''R"--project for statistical computing].

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Review 5.  WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseases.

Authors:  D Li; R Roberts
Journal:  Cell Mol Life Sci       Date:  2001-12       Impact factor: 9.261

6.  The common PPARgamma Pro12Ala polymorphism is associated with decreased risk of type 2 diabetes.

Authors:  D Altshuler; J N Hirschhorn; M Klannemark; C M Lindgren; M C Vohl; J Nemesh; C R Lane; S F Schaffner; S Bolk; C Brewer; T Tuomi; D Gaudet; T J Hudson; M Daly; L Groop; E S Lander
Journal:  Nat Genet       Date:  2000-09       Impact factor: 38.330

7.  Large-scale association studies of variants in genes encoding the pancreatic beta-cell KATP channel subunits Kir6.2 (KCNJ11) and SUR1 (ABCC8) confirm that the KCNJ11 E23K variant is associated with type 2 diabetes.

Authors:  Anna L Gloyn; Michael N Weedon; Katharine R Owen; Martina J Turner; Bridget A Knight; Graham Hitman; Mark Walker; Jonathan C Levy; Mike Sampson; Stephanie Halford; Mark I McCarthy; Andrew T Hattersley; Timothy M Frayling
Journal:  Diabetes       Date:  2003-02       Impact factor: 9.461

Review 8.  SH3 domains: complexity in moderation.

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Journal:  J Cell Sci       Date:  2001-04       Impact factor: 5.285

9.  A novel endonuclease IV post-PCR genotyping system.

Authors:  Igor V Kutyavin; Dave Milesi; Yevgeniy Belousov; Mikhail Podyminogin; Alexei Vorobiev; Vladimir Gorn; Eugeny A Lukhtanov; Nicolaas M J Vermeulen; Walt Mahoney
Journal:  Nucleic Acids Res       Date:  2006-09-29       Impact factor: 16.971

10.  HaploRec: efficient and accurate large-scale reconstruction of haplotypes.

Authors:  Lauri Eronen; Floris Geerts; Hannu Toivonen
Journal:  BMC Bioinformatics       Date:  2006-12-22       Impact factor: 3.169

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  83 in total

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Authors:  Orestis A Panagiotou; Evangelos Evangelou; John P A Ioannidis
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Review 2.  On the origin of the beta cell.

Authors:  Jennifer M Oliver-Krasinski; Doris A Stoffers
Journal:  Genes Dev       Date:  2008-08-01       Impact factor: 11.361

Review 3.  Clinical review: the genetics of type 2 diabetes: a realistic appraisal in 2008.

Authors:  Jose C Florez
Journal:  J Clin Endocrinol Metab       Date:  2008-09-09       Impact factor: 5.958

Review 4.  Newly identified loci highlight beta cell dysfunction as a key cause of type 2 diabetes: where are the insulin resistance genes?

Authors:  J C Florez
Journal:  Diabetologia       Date:  2008-05-27       Impact factor: 10.122

5.  Type 2 diabetes susceptibility loci in the Ashkenazi Jewish population.

Authors:  Michal Bronstein; Anne Pisanté; Benjamin Yakir; Ariel Darvasi
Journal:  Hum Genet       Date:  2008-05-31       Impact factor: 4.132

Review 6.  Genetic approaches to addiction: genes and alcohol.

Authors:  Francesca Ducci; David Goldman
Journal:  Addiction       Date:  2008-04-16       Impact factor: 6.526

7.  Replication study of novel risk variants in six genes with type 2 diabetes and related quantitative traits in the Han Chinese lean individuals.

Authors:  Xiao Yun Bao; Bin Peng; Mao Sheng Yang
Journal:  Mol Biol Rep       Date:  2011-06-05       Impact factor: 2.316

Review 8.  Type 2 diabetes: new genes, new understanding.

Authors:  Inga Prokopenko; Mark I McCarthy; Cecilia M Lindgren
Journal:  Trends Genet       Date:  2008-10-25       Impact factor: 11.639

9.  Colon tumor mutations and epigenetic changes associated with genetic polymorphism: insight into disease pathways.

Authors:  Martha L Slattery; Roger K Wolff; Karen Curtin; Frank Fitzpatrick; Jennifer Herrick; John D Potter; Bette J Caan; Wade S Samowitz
Journal:  Mutat Res       Date:  2008-10-15       Impact factor: 2.433

10.  Single nucleotide transcription factor 7-like 2 (TCF7L2) gene polymorphisms in antiislet autoantibody-negative patients at onset of diabetes.

Authors:  Jeesuk Yu; Andrea K Steck; Sunanda Babu; Liping Yu; Dongmei Miao; Kim McFann; John Hutton; George S Eisenbarth; Georgeanna Klingensmith
Journal:  J Clin Endocrinol Metab       Date:  2008-12-02       Impact factor: 5.958

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