Literature DB >> 17664965

Quantifying hydrogen-bonding strength: the measurement of 2hJNN couplings in self-assembled guanosines by solid-state 15N spin-echo MAS NMR.

Tran N Pham1, John M Griffin, Stefano Masiero, Stefano Lena, Giovanni Gottarelli, Paul Hodgkinson, Claudiu Filip, Steven P Brown.   

Abstract

(2h)J(NN) hydrogen-bond mediated J couplings are measured in the solid state for two synthetic deoxyguanosine derivatives by (15)N MAS NMR spin-echo experiments. The use of rotor-synchronised Hahn-echo pulse train (RS-HEPT) (1)H decoupling, with a duty cycle of 6%, allows spin-echo durations out to 200 ms, hence enabling the accurate determination of J couplings as small as 3.8 Hz. A single-crystal X-ray diffraction structure exists for the shorter alkyl chain derivative dG(C(3))(2): the observation of significantly different (2h)J(NN) couplings, 6.2 +/- 0.4 and 7.4 +/- 0.4 Hz, for the two resolved N7 resonances is to be expected given the NH...N hydrogen-bonding distances of 2.91 and 2.83 A for the two distinct molecules in the asymmetric unit cell. For the longer alkyl chain derivative, dG(C(10))(2), for which there is no single-crystal diffraction structure, a (15)N refocused INADEQUATE spectrum (Pham et al., J. Am. Chem. Soc., 2005, 127, 16018-16019) has demonstrated the presence of N2-H...N7 intermolecular hydrogen-bonds indicative of a quartet-like structure. The (2h)J(NN) hydrogen-bond mediated J coupling of 5.9 +/- 0.2 Hz is at the lower end of the range (5.9-8.2 Hz) of (2h)J(NN) couplings determined from solution-state NMR of guanosine quartets in quadruplex DNA. A full discussion of the determination of error bars on the fitted parameters is given; specifically, error bars determined by a non-linear fitting (using the covariance matrix) or in a Monte-Carlo fashion are found to give effectively identical results.

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Year:  2007        PMID: 17664965     DOI: 10.1039/b703513f

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  6 in total

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Authors:  Riqiang Fu; Yimin Miao; Huajun Qin; Timothy A Cross
Journal:  J Am Chem Soc       Date:  2020-01-28       Impact factor: 15.419

2.  Revealing weak histidine 15N homonuclear scalar couplings using Solid-State Magic-Angle-Spinning NMR spectroscopy.

Authors:  Chunhua Tan; Yuquan Chen; Xinhua Peng; Zhong Chen; Shuhui Cai; Timothy A Cross; Riqiang Fu
Journal:  J Magn Reson       Date:  2020-06-01       Impact factor: 2.229

3.  Hierarchical formation of fibrillar and lamellar self-assemblies from guanosine-based motifs.

Authors:  Paolo Neviani; Dominique Sarazin; Marc Schmutz; Christian Blanck; Nicolas Giuseppone; Gian Piero Spada
Journal:  J Nucleic Acids       Date:  2010-07-13

4.  Determination of a complex crystal structure in the absence of single crystals: analysis of powder X-ray diffraction data, guided by solid-state NMR and periodic DFT calculations, reveals a new 2'-deoxyguanosine structural motif.

Authors:  Colan E Hughes; G N Manjunatha Reddy; Stefano Masiero; Steven P Brown; P Andrew Williams; Kenneth D M Harris
Journal:  Chem Sci       Date:  2017-03-16       Impact factor: 9.825

5.  Rationalising Heteronuclear Decoupling in Refocussing Applications of Solid-State NMR Spectroscopy.

Authors:  Ilya Frantsuzov; Suresh K Vasa; Matthias Ernst; Steven P Brown; Vadim Zorin; Arno P M Kentgens; Paul Hodgkinson
Journal:  Chemphyschem       Date:  2017-01-23       Impact factor: 3.102

6.  Imidazole-Imidazole Hydrogen Bonding in the pH-Sensing Histidine Side Chains of Influenza A M2.

Authors:  Kumar Tekwani Movellan; Melanie Wegstroth; Kerstin Overkamp; Andrei Leonov; Stefan Becker; Loren B Andreas
Journal:  J Am Chem Soc       Date:  2020-01-30       Impact factor: 15.419

  6 in total

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