Literature DB >> 17660534

Evolutionary history and positional shift of a rice centromere.

Jianxin Ma1, Rod A Wing, Jeffrey L Bennetzen, Scott A Jackson.   

Abstract

Rice centromere 8 was previously proposed to be an "immature" centromere that recently arose from a genic region. Our comparative genomics analysis indicates that Cen8 was formed at its current location at least 7-9 million years ago and was physically shifted by a more recent inversion of a segment spanning centromeric and pericentromeric regions.

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Mesh：

Year:  2007        PMID： 17660534      PMCID： PMC2034625          DOI： 10.1534/genetics.107.078709

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  19 in total

1.  Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

Authors:  Zhukuan Cheng; Fenggao Dong; Tim Langdon; Shu Ouyang; C Robin Buell; Minghong Gu; Frederick R Blattner; Jiming Jiang
Journal:  Plant Cell       Date:  2002-08       Impact factor: 11.277

2.  Mechanisms of recent genome size variation in flowering plants.

Authors:  Jeffrey L Bennetzen; Jianxin Ma; Katrien M Devos
Journal:  Ann Bot       Date:  2005-01       Impact factor: 4.357

3.  Centromere renewal and replacement in the plant kingdom.

Authors:  R Kelly Dawe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-09       Impact factor: 11.205

4.  The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.

Authors:  Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara Blackmon; Eric Fang; Jeffery B Tomkins; Darshan Brar; David MacKill; Susan McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

5.  Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species.

Authors:  Hye-Ran Lee; Wenli Zhang; Tim Langdon; Weiwei Jin; Huihuang Yan; Zhukuan Cheng; Jiming Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

6.  The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.

Authors:  Rod A Wing; Jetty S S Ammiraju; Meizhong Luo; Hyeran Kim; Yeisoo Yu; Dave Kudrna; Jose L Goicoechea; Wenming Wang; Will Nelson; Kiran Rao; Darshan Brar; Dave J Mackill; Bin Han; Cari Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

7.  The map-based sequence of the rice genome.

Authors: 
Journal:  Nature       Date:  2005-08-11       Impact factor: 49.962

8.  Rapid recent growth and divergence of rice nuclear genomes.

Authors:  Jianxin Ma; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-07       Impact factor: 11.205

9.  Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize.

Authors:  Akio Kato; Jonathan C Lamb; James A Birchler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-01       Impact factor: 11.205

10.  Sequencing of a rice centromere uncovers active genes.

Authors:  Kiyotaka Nagaki; Zhukuan Cheng; Shu Ouyang; Paul B Talbert; Mary Kim; Kristine M Jones; Steven Henikoff; C Robin Buell; Jiming Jiang
Journal:  Nat Genet       Date:  2004-01-11       Impact factor: 38.330
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  14 in total

1.  Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Authors:  Florent Murat; Jian-Hong Xu; Eric Tannier; Michael Abrouk; Nicolas Guilhot; Caroline Pont; Joachim Messing; Jérôme Salse
Journal:  Genome Res       Date:  2010-09-28       Impact factor: 9.043

2.  Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.

Authors:  Fei Lu; Jetty S S Ammiraju; Abhijit Sanyal; Shengli Zhang; Rentao Song; Jinfeng Chen; Guisheng Li; Yi Sui; Xiang Song; Zhukuan Cheng; Antonio Costa de Oliveira; Jeffrey L Bennetzen; Scott A Jackson; Rod A Wing; Mingsheng Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-22       Impact factor: 11.205

3.  Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres.

Authors:  Zhao Liu; Wei Yue; Dayong Li; Richard R-C Wang; Xiuying Kong; Kun Lu; Guixiang Wang; Yushen Dong; Weiwei Jin; Xueyong Zhang
Journal:  Chromosoma       Date:  2008-05-22       Impact factor: 4.316

4.  Centromere retention and loss during the descent of maize from a tetraploid ancestor.

Authors:  Hao Wang; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-29       Impact factor: 11.205

5.  Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons.

Authors:  L L Qi; J J Wu; B Friebe; C Qian; Y Q Gu; D L Fu; B S Gill
Journal:  Chromosome Res       Date:  2013-08-17       Impact factor: 5.239

6.  Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.

Authors:  Philipp Wiemann; Christian M K Sieber; Katharina W von Bargen; Lena Studt; Eva-Maria Niehaus; Jose J Espino; Kathleen Huß; Caroline B Michielse; Sabine Albermann; Dominik Wagner; Sonja V Bergner; Lanelle R Connolly; Andreas Fischer; Gunter Reuter; Karin Kleigrewe; Till Bald; Brenda D Wingfield; Ron Ophir; Stanley Freeman; Michael Hippler; Kristina M Smith; Daren W Brown; Robert H Proctor; Martin Münsterkötter; Michael Freitag; Hans-Ulrich Humpf; Ulrich Güldener; Bettina Tudzynski
Journal:  PLoS Pathog       Date:  2013-06-27       Impact factor: 6.823

7.  Phylogenomics of African guenons.

Authors:  Sibyle Moulin; Michèle Gerbault-Seureau; Bernard Dutrillaux; Florence Anne Richard
Journal:  Chromosome Res       Date:  2008-07-13       Impact factor: 5.239

8.  Collinearity of homoeologous group 3 chromosomes in the genus Hordeum and Secale cereale as revealed by 3H-derived FISH analysis.

Authors:  Lala Aliyeva-Schnorr; Nils Stein; Andreas Houben
Journal:  Chromosome Res       Date:  2016-02-16       Impact factor: 5.239

9.  Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.

Authors:  Yi Liao; Xuemei Zhang; Bo Li; Tieyan Liu; Jinfeng Chen; Zetao Bai; Meijiao Wang; Jinfeng Shi; Jason G Walling; Rod A Wing; Jiming Jiang; Mingsheng Chen
Journal:  Plant Cell       Date:  2018-07-02       Impact factor: 11.277

10.  Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes.

Authors:  Lu Yang; Tieyan Liu; Bo Li; Yi Sui; Jinfeng Chen; Jinfeng Shi; Rod A Wing; Mingsheng Chen
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240
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