Literature DB >> 17658903

Annotation of bacterial and archaeal genomes: improving accuracy and consistency.

Ross Overbeek1, Daniela Bartels, Veronika Vonstein, Folker Meyer.   

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Year:  2007        PMID： 17658903     DOI： 10.1021/cr068308h

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  20 in total

1.  A vast collection of microbial genes that are toxic to bacteria.

Authors:  Aya Kimelman; Asaf Levy; Hila Sberro; Shahar Kidron; Azita Leavitt; Gil Amitai; Deborah R Yoder-Himes; Omri Wurtzel; Yiwen Zhu; Edward M Rubin; Rotem Sorek
Journal:  Genome Res       Date:  2012-02-01       Impact factor: 9.043

2.  SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria.

Authors:  S Krishnakumar; Dilip A Durai; Pramod P Wangikar; Ganesh A Viswanathan
Journal:  Photosynth Res       Date:  2013-08-24       Impact factor: 3.573

Review 3.  Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity.

Authors:  Rotem Sorek; Pascale Cossart
Journal:  Nat Rev Genet       Date:  2009-11-24       Impact factor: 53.242

4.  MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis.

Authors:  Folker Meyer; Saurabh Bagchi; Somali Chaterji; Wolfgang Gerlach; Ananth Grama; Travis Harrison; Tobias Paczian; William L Trimble; Andreas Wilke
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

5.  A protocol for generating a high-quality genome-scale metabolic reconstruction.

Authors:  Ines Thiele; Bernhard Ø Palsson
Journal:  Nat Protoc       Date:  2010-01-07       Impact factor: 13.491

6.  A conserved UDP-glucose dehydrogenase encoded outside the hasABC operon contributes to capsule biogenesis in group A Streptococcus.

Authors:  Jason N Cole; Ramy K Aziz; Kirsten Kuipers; Anjuli M Timmer; Victor Nizet; Nina M van Sorge
Journal:  J Bacteriol       Date:  2012-09-07       Impact factor: 3.490

7.  FIGfams: yet another set of protein families.

Authors:  Folker Meyer; Ross Overbeek; Alex Rodriguez
Journal:  Nucleic Acids Res       Date:  2009-09-17       Impact factor: 16.971

8.  Evaluation of three automated genome annotations for Halorhabdus utahensis.

Authors:  Peter Bakke; Nick Carney; Will Deloache; Mary Gearing; Kjeld Ingvorsen; Matt Lotz; Jay McNair; Pallavi Penumetcha; Samantha Simpson; Laura Voss; Max Win; Laurie J Heyer; A Malcolm Campbell
Journal:  PLoS One       Date:  2009-07-20       Impact factor: 3.240

9.  The genome organization of Thermotoga maritima reflects its lifestyle.

Authors:  Haythem Latif; Joshua A Lerman; Vasiliy A Portnoy; Yekaterina Tarasova; Harish Nagarajan; Alexandra C Schrimpe-Rutledge; Richard D Smith; Joshua N Adkins; Dae-Hee Lee; Yu Qiu; Karsten Zengler
Journal:  PLoS Genet       Date:  2013-04-25       Impact factor: 5.917

10.  Characterization of a Streptococcus mutans intergenic region containing a small toxic peptide and its cis-encoded antisense small RNA antitoxin.

Authors:  Stephanie Koyanagi; Céline M Lévesque
Journal:  PLoS One       Date:  2013-01-11       Impact factor: 3.240
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