Literature DB >> 17658902

Protein annotation at genomic scale: the current status.

Dmitrij Frishman1.   

Abstract

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Year:  2007        PMID： 17658902     DOI： 10.1021/cr068303k

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  26 in total

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Review 2.  Divergent evolution in enolase superfamily: strategies for assigning functions.

Authors:  John A Gerlt; Patricia C Babbitt; Matthew P Jacobson; Steven C Almo
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

3.  Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae.

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4.  Optimizing high performance computing workflow for protein functional annotation.

Authors:  Larissa Stanberry; Bhanu Rekepalli; Yuan Liu; Paul Giblock; Roger Higdon; Elizabeth Montague; William Broomall; Natali Kolker; Eugene Kolker
Journal:  Concurr Comput       Date:  2014-09-10       Impact factor: 1.536

5.  Linking genome-scale metabolic modeling and genome annotation.

Authors:  Edik M Blais; Arvind K Chavali; Jason A Papin
Journal:  Methods Mol Biol       Date:  2013

6.  Bacterial protein structures reveal phylum dependent divergence.

Authors:  Matthew D Shortridge; Thomas Triplet; Peter Revesz; Mark A Griep; Robert Powers
Journal:  Comput Biol Chem       Date:  2011-01-18       Impact factor: 2.877

7.  Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: BIOCHEMICAL, STRUCTURAL, AND EVOLUTIONARY INSIGHTS.

Authors:  Ekaterina Kuznetsova; Boguslaw Nocek; Greg Brown; Kira S Makarova; Robert Flick; Yuri I Wolf; Anna Khusnutdinova; Elena Evdokimova; Ke Jin; Kemin Tan; Andrew D Hanson; Ghulam Hasnain; Rémi Zallot; Valérie de Crécy-Lagard; Mohan Babu; Alexei Savchenko; Andrzej Joachimiak; Aled M Edwards; Eugene V Koonin; Alexander F Yakunin
Journal:  J Biol Chem       Date:  2015-06-12       Impact factor: 5.157

8.  A 5-formyltetrahydrofolate cycloligase paralog from all domains of life: comparative genomic and experimental evidence for a cryptic role in thiamin metabolism.

Authors:  Anne Pribat; Ian K Blaby; Aurora Lara-Núñez; Linda Jeanguenin; Romain Fouquet; Océane Frelin; Jesse F Gregory; Benjamin Philmus; Tadhg P Begley; Valérie de Crécy-Lagard; Andrew D Hanson
Journal:  Funct Integr Genomics       Date:  2011-05-03       Impact factor: 3.410

Review 9.  'Unknown' proteins and 'orphan' enzymes: the missing half of the engineering parts list--and how to find it.

Authors:  Andrew D Hanson; Anne Pribat; Jeffrey C Waller; Valérie de Crécy-Lagard
Journal:  Biochem J       Date:  2009-12-14       Impact factor: 3.857

10.  A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions.

Authors:  Brenton Louie; Roger Higdon; Eugene Kolker
Journal:  PLoS One       Date:  2009-10-21       Impact factor: 3.240
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