Literature DB >> 17656759

Cryoelectron microscopy of icosahedral virus particles.

Wen Jiang1, Wah Chiu.   

Abstract

With the rapid progresses in both instrumentation and computing, it is increasingly straightforward and routine to determine the structures of icosahedral viruses to subnanometer resolutions (6-10 A) by cryoelectron microscopy and image reconstruction. In this resolution range, secondary structure elements of protein subunits can be clearly discerned. Combining the three-dimensional density map and bioinformatics of the protein components, the folds of the virus capsid shell proteins can be derived. This chapter will describe the experimental and computational procedures that lead to subnanometer resolution structural determinations of icosahedral virus particles. In addition, we will describe how to extract useful structural information from the three-dimensional maps.

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Year:  2007        PMID: 17656759     DOI: 10.1007/978-1-59745-294-6_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Segmentation of electron tomographic data sets using fuzzy set theory principles.

Authors:  Edgar Garduño; Mona Wong-Barnum; Niels Volkmann; Mark H Ellisman
Journal:  J Struct Biol       Date:  2008-02-16       Impact factor: 2.867

2.  Insights into bunyavirus architecture from electron cryotomography of Uukuniemi virus.

Authors:  A K Overby; R F Pettersson; K Grünewald; J T Huiskonen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-12       Impact factor: 11.205

3.  Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm.

Authors:  Xiangan Liu; Wen Jiang; Joanita Jakana; Wah Chiu
Journal:  J Struct Biol       Date:  2007-07-06       Impact factor: 2.867

4.  An algorithm for estimation and correction of anisotropic magnification distortion of cryo-EM images without need of pre-calibration.

Authors:  Guimei Yu; Kunpeng Li; Yue Liu; Zhenguo Chen; Zhiqing Wang; Rui Yan; Thomas Klose; Liang Tang; Wen Jiang
Journal:  J Struct Biol       Date:  2016-06-04       Impact factor: 2.867

5.  Single particle cryo-electron microscopy and 3-D reconstruction of viruses.

Authors:  Fei Guo; Wen Jiang
Journal:  Methods Mol Biol       Date:  2014

Review 6.  Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography.

Authors:  Juan Chang; Xiangan Liu; Ryan H Rochat; Matthew L Baker; Wah Chiu
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

7.  Enhancing and initiating phage-based therapies.

Authors:  Philip Serwer; Elena T Wright; Juan T Chang; Xiangan Liu
Journal:  Bacteriophage       Date:  2014-12-15

8.  Component tree analysis of cystovirus φ6 nucleocapsid Cryo-EM single particle reconstructions.

Authors:  Lucas M Oliveira; Ze Ye; Al Katz; Alexandra Alimova; Hui Wei; Gabor T Herman; Paul Gottlieb
Journal:  PLoS One       Date:  2018-01-04       Impact factor: 3.240

9.  Engineering hepatitis B virus core particles for targeting HER2 receptors in vitro and in vivo.

Authors:  Izzat Fahimuddin Bin Mohamed Suffian; Julie Tzu-Wen Wang; Naomi O Hodgins; Rebecca Klippstein; Mitla Garcia-Maya; Paul Brown; Yuya Nishimura; Hamed Heidari; Sara Bals; Jane K Sosabowski; Chiaki Ogino; Akihiko Kondo; Khuloud T Al-Jamal
Journal:  Biomaterials       Date:  2016-12-14       Impact factor: 12.479

10.  2DKD: a toolkit for content-based local image search.

Authors:  Julian S DeVille; Daisuke Kihara; Atilla Sit
Journal:  Source Code Biol Med       Date:  2020-02-10
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