Literature DB >> 17656580

Genetic selection reveals the role of a buried, conserved polar residue.

R Jeremy Johnson1, Shawn R Lin, Ronald T Raines.   

Abstract

The burial of nonpolar surface area is known to enhance markedly the conformational stability of proteins. The contribution from the burial of polar surface area is less clear. Here, we report on the tolerance to substitution of Ser75 of bovine pancreatic ribonuclease (RNase A), a residue that has the unusual attributes of being buried, conserved, and polar. To identify variants that retain biological function, we used a genetic selection based on the intrinsic cytotoxicity of ribonucleolytic activity. Cell growth at 30 degrees C, 37 degrees C, and 44 degrees C correlated with residue size, indicating that the primary attribute of Ser75 is its small size. The side-chain hydroxyl group of Ser75 forms a hydrogen bond with a main-chain nitrogen. The conformational stability of the S75A variant, which lacks this hydrogen bond, was diminished by DeltaDeltaG = 2.5 kcal/mol. Threonine, which can reinstate this hydrogen bond, provided a catalytically active RNase A variant at higher temperatures than did some smaller residues (including aspartate), indicating that a secondary attribute of Ser75 is the ability of its uncharged side chain to accept a hydrogen bond. These results provide insight on the imperatives for the conservation of a buried polar residue.

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Year:  2007        PMID: 17656580      PMCID: PMC2203362          DOI: 10.1110/ps.072938907

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  51 in total

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Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

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Authors:  Haiwei H Guo; Juno Choe; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-14       Impact factor: 11.205

3.  Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.

Authors:  Jai K Kaushik; Satoshi Iimura; Kyoko Ogasahara; Yuriko Yamagata; Shin-ichi Segawa; Katsuhide Yutani
Journal:  Biochemistry       Date:  2006-06-13       Impact factor: 3.162

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Authors:  S Aota; T Gojobori; F Ishibashi; T Maruyama; T Ikemura
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

5.  Genetic and structural analysis of the protein stability problem.

Authors:  B W Matthews
Journal:  Biochemistry       Date:  1987-11-03       Impact factor: 3.162

6.  Valine 108, a chain-folding initiation site-belonging residue, crucial for the ribonuclease A stability.

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Journal:  Biochem Biophys Res Commun       Date:  1999-11-19       Impact factor: 3.575

7.  Engineering ribonuclease A: production, purification and characterization of wild-type enzyme and mutants at Gln11.

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Journal:  Protein Eng       Date:  1995-03

8.  Structural bases of stability-function tradeoffs in enzymes.

Authors:  Beth M Beadle; Brian K Shoichet
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

9.  Contribution of buried hydrogen bonds to protein stability. The crystal structures of two barnase mutants.

Authors:  Y W Chen; A R Fersht; K Henrick
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469

10.  ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions.

Authors:  M D Shaji Kumar; K Abdulla Bava; M Michael Gromiha; Ponraj Prabakaran; Koji Kitajima; Hatsuho Uedaira; Akinori Sarai
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  3 in total

1.  Influence of C-H...O interactions on the structural stability of β-lactamases.

Authors:  P Lavanya; Sudha Ramaiah; Anand Anbarasu
Journal:  J Biol Phys       Date:  2013-06-25       Impact factor: 1.365

2.  Cellular uptake of ribonuclease A relies on anionic glycans.

Authors:  Tzu-Yuan Chao; Luke D Lavis; Ronald T Raines
Journal:  Biochemistry       Date:  2010-11-23       Impact factor: 3.162

3.  Intraspecies regulation of ribonucleolytic activity.

Authors:  R Jeremy Johnson; Luke D Lavis; Ronald T Raines
Journal:  Biochemistry       Date:  2007-10-23       Impact factor: 3.162

  3 in total

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