Literature DB >> 17645527

Degradation of 3-O-methylgallate in Sphingomonas paucimobilis SYK-6 by pathways involving protocatechuate 4,5-dioxygenase.

Daisuke Kasai1, Eiji Masai, Yoshihiro Katayama, Masao Fukuda.   

Abstract

Sphingomonas paucimobilis SYK-6 converts vanillate and syringate to protocatechuate and 3-O-methylgallate (3MGA), respectively. 3MGA is metabolized via multiple pathways involving 3MGA 3,4-dioxygenase, protocatechuate 4,5-dioxygenase (LigAB), and gallate dioxygenase whereas protocatechuate is degraded via the protocatechuate 4,5-cleavage pathway. Here the secondary role of LigAB in syringate metabolism is investigated. The reaction product of 3MGA catalyzed by His-tagged LigAB was identified as 4-carboxy-2-hydroxy-6-methoxy-6-oxohexa-2,4-dienoate (CHMOD) and 2-pyrone-4,6-dicarboxylate (PDC), indicating that 3MGA is transformed to CHMOD and PDC by both reactions catalyzed by DesZ and LigAB. Mutant analysis revealed that the 3MGA catabolic pathways involving LigAB are functional in SYK-6.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17645527     DOI: 10.1111/j.1574-6968.2007.00855.x

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  13 in total

1.  Rapid, Parallel Identification of Catabolism Pathways of Lignin-Derived Aromatic Compounds in Novosphingobium aromaticivorans.

Authors:  Jacob H Cecil; David C Garcia; Richard J Giannone; Joshua K Michener
Journal:  Appl Environ Microbiol       Date:  2018-10-30       Impact factor: 4.792

2.  Oxidative opening of the aromatic ring: Tracing the natural history of a large superfamily of dioxygenase domains and their relatives.

Authors:  A Maxwell Burroughs; Margaret E Glasner; Kevin P Barry; Erika A Taylor; L Aravind
Journal:  J Biol Chem       Date:  2019-05-15       Impact factor: 5.157

3.  Regulatory system of the protocatechuate 4,5-cleavage pathway genes essential for lignin downstream catabolism.

Authors:  Naofumi Kamimura; Kazuhiro Takamura; Hirofumi Hara; Daisuke Kasai; Ryo Natsume; Toshiya Senda; Yoshihiro Katayama; Masao Fukuda; Eiji Masai
Journal:  J Bacteriol       Date:  2010-04-30       Impact factor: 3.490

4.  Comparative genome analysis provides insights into the evolution and adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum.

Authors:  Sarah Green; David J Studholme; Bridget E Laue; Federico Dorati; Helen Lovell; Dawn Arnold; Joan E Cottrell; Stephen Bridgett; Mark Blaxter; Edgar Huitema; Richard Thwaites; Paul M Sharp; Robert W Jackson; Sophien Kamoun
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

5.  Characterizing the promiscuity of LigAB, a lignin catabolite degrading extradiol dioxygenase from Sphingomonas paucimobilis SYK-6.

Authors:  Kevin P Barry; Erika A Taylor
Journal:  Biochemistry       Date:  2013-09-11       Impact factor: 3.162

6.  Biodegradation of 4-hydroxybenzoic acid by Acinetobacter johnsonii FZ-5 and Klebsiella oxytoca FZ-8 under anaerobic conditions.

Authors:  Peng Lu; Huiying Huang; Yixiao Sun; Mengyao Qiang; Yan Zhu; Mengjiao Cao; Xue Peng; Bo Yuan; Zhaozhong Feng
Journal:  Biodegradation       Date:  2021-10-05       Impact factor: 3.909

7.  Methanogenic degradation of lignin-derived monoaromatic compounds by microbial enrichments from rice paddy field soil.

Authors:  Souichiro Kato; Kanako Chino; Naofumi Kamimura; Eiji Masai; Isao Yumoto; Yoichi Kamagata
Journal:  Sci Rep       Date:  2015-09-24       Impact factor: 4.379

8.  Draft Whole-Genome Sequence of the Fluorene-Degrading Sphingobium sp. Strain LB126, Isolated from Polycyclic Aromatic Hydrocarbon-Contaminated Soil.

Authors:  Floriana Augelletti; Julien Tremblay; Spiros N Agathos; Ben Stenuit
Journal:  Genome Announc       Date:  2018-04-12

9.  Genomics and biochemistry investigation on the metabolic pathway of milled wood and alkali lignin-derived aromatic metabolites of Comamonas serinivorans SP-35.

Authors:  Daochen Zhu; Haibing Si; Peipei Zhang; Alei Geng; Weimin Zhang; Bin Yang; Wei-Jun Qian; Murillo Gabriel; Jianzhong Sun
Journal:  Biotechnol Biofuels       Date:  2018-12-27       Impact factor: 6.040

10.  Regulation of vanillate and syringate catabolism by a MarR-type transcriptional regulator DesR in Sphingobium sp. SYK-6.

Authors:  Takuma Araki; Shusuke Umeda; Naofumi Kamimura; Daisuke Kasai; Shuta Kumano; Tomokuni Abe; Chika Kawazu; Yuichiro Otsuka; Masaya Nakamura; Yoshihiro Katayama; Masao Fukuda; Eiji Masai
Journal:  Sci Rep       Date:  2019-12-02       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.