Literature DB >> 17642472

Inactivation of MOXD2 and S100A15A by exon deletion during human evolution.

Yoonsoo Hahn1, Sangkyun Jeong, Byungkook Lee.   

Abstract

We devised a bioinformatics method for systematic identification of putative human-specific exon-deletion mutations that occurred after the divergence of human and chimpanzee and experimentally verified 2 of the predicted mutations in MOXD2 and S100A15A genes. MOXD2 gene encodes a monooxygenase that is highly conserved in mammals and is mostly expressed in the olfactory epithelium in mouse. The presence of a deletion of the last 2 exons and a polymorphic nonsense mutation in exon 6 suggests that MOXD2 gene is inactive in humans. S100A15A is a member of the S100 family of calcium-binding proteins, the mouse ortholog of which is expressed during epidermal maturation. Human S100A15A gene is likely to be inactive because the start codon-bearing exon is deleted in human. We propose that modification or inactivation of MOXD2 and S100A15A genes have contributed to the loss of certain smell sense in humans and to the development of human skin.

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Year:  2007        PMID: 17642472     DOI: 10.1093/molbev/msm146

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  11 in total

1.  Species-specific exon loss in human transcriptomes.

Authors:  Jinkai Wang; Zhi-xiang Lu; Collin J Tokheim; Sara E Miller; Yi Xing
Journal:  Mol Biol Evol       Date:  2014-11-14       Impact factor: 16.240

2.  Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method.

Authors:  Chengjun Zhang; Jia Wang; Weibo Xie; Gang Zhou; Manyuan Long; Qifa Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-26       Impact factor: 11.205

Review 3.  Recent evolution of the human skin barrier.

Authors:  Erin A Brettmann; Cristina de Guzman Strong
Journal:  Exp Dermatol       Date:  2018-06-28       Impact factor: 3.960

4.  Divergence, demography and gene loss along the human lineage.

Authors:  Hie Lim Kim; Takeshi Igawa; Ayaka Kawashima; Yoko Satta; Naoyuki Takahata
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

5.  Human-specific protein isoforms produced by novel splice sites in the human genome after the human-chimpanzee divergence.

Authors:  Dong Seon Kim; Yoonsoo Hahn
Journal:  BMC Bioinformatics       Date:  2012-11-13       Impact factor: 3.169

Review 6.  Loss of gene function and evolution of human phenotypes.

Authors:  Hye Ji Oh; Dongjin Choi; Chul Jun Goh; Yoonsoo Hahn
Journal:  BMB Rep       Date:  2015-07       Impact factor: 4.778

7.  Gains of ubiquitylation sites in highly conserved proteins in the human lineage.

Authors:  Dong Seon Kim; Yoonsoo Hahn
Journal:  BMC Bioinformatics       Date:  2012-11-17       Impact factor: 3.169

8.  Frequent loss and alteration of the MOXD2 gene in catarrhines and whales: a possible connection with the evolution of olfaction.

Authors:  Dong Seon Kim; Yao Wang; Hye Ji Oh; Kangseok Lee; Yoonsoo Hahn
Journal:  PLoS One       Date:  2014-08-07       Impact factor: 3.240

9.  MOXD2, a Gene Possibly Associated with Olfaction, Is Frequently Inactivated in Birds.

Authors:  Chul Jun Goh; Dongjin Choi; Dong-Bin Park; Hyein Kim; Yoonsoo Hahn
Journal:  PLoS One       Date:  2016-04-13       Impact factor: 3.240

10.  The human olfactory transcriptome.

Authors:  Tsviya Olender; Ifat Keydar; Jayant M Pinto; Pavlo Tatarskyy; Anna Alkelai; Ming-Shan Chien; Simon Fishilevich; Diego Restrepo; Hiroaki Matsunami; Yoav Gilad; Doron Lancet
Journal:  BMC Genomics       Date:  2016-08-11       Impact factor: 3.969

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