Literature DB >> 17637336

The third CAPRI assessment meeting Toronto, Canada, April 20-21, 2007.

Joël Janin1, Shoshana Wodak.   

Abstract

CAPRI is a community-wide experiment to test protein-protein docking methods in blind predictions. The Toronto meeting assessed structure predictions made from 2005-2007 on nine target protein-protein complexes or homodimers, and reported new developments in functions used to score predicted interactions, in treatment of conformational flexibility, and in taking nonstructural information into account in the predictions.

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Year:  2007        PMID: 17637336     DOI: 10.1016/j.str.2007.06.007

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  15 in total

1.  Protein interface conservation across structure space.

Authors:  Qiangfeng Cliff Zhang; Donald Petrey; Raquel Norel; Barry H Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Structural models of protein-DNA complexes based on interface prediction and docking.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Curr Protein Pept Sci       Date:  2011-09       Impact factor: 3.272

3.  FiberDock: Flexible induced-fit backbone refinement in molecular docking.

Authors:  Efrat Mashiach; Ruth Nussinov; Haim J Wolfson
Journal:  Proteins       Date:  2010-05-01

Review 4.  Principles of flexible protein-protein docking.

Authors:  Nelly Andrusier; Efrat Mashiach; Ruth Nussinov; Haim J Wolfson
Journal:  Proteins       Date:  2008-11-01

5.  Predicting protein-protein interface residues using local surface structural similarity.

Authors:  Rafael A Jordan; Yasser El-Manzalawy; Drena Dobbs; Vasant Honavar
Journal:  BMC Bioinformatics       Date:  2012-03-18       Impact factor: 3.169

Review 6.  Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.

Authors:  Alexander Leitner; Thomas Walzthoeni; Abdullah Kahraman; Franz Herzog; Oliver Rinner; Martin Beck; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2010-03-31       Impact factor: 5.911

7.  Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers.

Authors:  Chen Yanover; Philip Bradley
Journal:  Nucleic Acids Res       Date:  2011-02-22       Impact factor: 16.971

8.  Developing a comparative docking protocol for the prediction of peptide selectivity profiles: investigation of potassium channel toxins.

Authors:  Po-Chia Chen; Serdar Kuyucak
Journal:  Toxins (Basel)       Date:  2012-02-06       Impact factor: 4.546

9.  The role of structural bioinformatics resources in the era of integrative structural biology.

Authors:  Aleksandras Gutmanas; Thomas J Oldfield; Ardan Patwardhan; Sanchayita Sen; Sameer Velankar; Gerard J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-04-19

10.  Structural deformation upon protein-protein interaction: a structural alphabet approach.

Authors:  Juliette Martin; Leslie Regad; Hélène Lecornet; Anne-Claude Camproux
Journal:  BMC Struct Biol       Date:  2008-02-28
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