Literature DB >> 17631401

Identification of organic molecules from a structure database using proton and carbon NMR analysis results.

Reinhard Dunkel1, Xinzi Wu.   

Abstract

A compound is identified by matching its proton and/or carbon NMR spectra to NIH PubChem molecular structures. The matching process involves analyzing 1D proton, 1D carbon, DEPT, and/or HSQC spectra, and comparing the number of NMR resonances, detected proton and carbon shifts, likely number of methyl- and methoxy-groups, and an optionally specified molecular formula to predicted proton and carbon shifts of PubChem structures. A structure verification module rates the consistency between experimental spectral analysis results and a proposed structure (not limited to PubChem structures) and assigns observed shifts to the proposed structure. The spectral analysis, structure identification, and structure verification are largely automated in a software package and can be performed in minutes.

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Year:  2007        PMID: 17631401      PMCID: PMC2096635          DOI: 10.1016/j.jmr.2007.06.007

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  7 in total

Review 1.  Choosing the best pulse sequences, acquisition parameters, postacquisition processing strategies, and probes for natural product structure elucidation by NMR spectroscopy.

Authors:  William F Reynolds; Raúl G Enríquez
Journal:  J Nat Prod       Date:  2002-02       Impact factor: 4.050

Review 2.  Recent developments in automated structure elucidation of natural products.

Authors:  Christoph Steinbeck
Journal:  Nat Prod Rep       Date:  2004-07-14       Impact factor: 13.423

3.  Improvements in the computerized analysis of 2D INADEQUATE spectra.

Authors:  R Dunkel; C L Mayne; R J Pugmire; D M Grant
Journal:  Anal Chem       Date:  1992-12-15       Impact factor: 6.986

4.  Applications of the improved computerized analysis of 2D INADEQUATE spectra.

Authors:  R Dunkel; C L Mayne; M P Foster; C M Ireland; D Li; N L Owen; R J Pugmire; D M Grant
Journal:  Anal Chem       Date:  1992-12-15       Impact factor: 6.986

5.  Automated structure verification based on 1H NMR prediction.

Authors:  Sergey S Golotvin; Eugene Vodopianov; Brent A Lefebvre; Antony J Williams; Timothy D Spitzer
Journal:  Magn Reson Chem       Date:  2006-05       Impact factor: 2.447

6.  Towards the automatic analysis of NMR spectra: part 6. Confirmation of chemical structure employing both 1H and 13C NMR spectra.

Authors:  Lee Griffiths; Rob Horton
Journal:  Magn Reson Chem       Date:  2006-02       Impact factor: 2.447

7.  NMRShiftDB -- compound identification and structure elucidation support through a free community-built web database.

Authors:  Christoph Steinbeck; Stefan Kuhn
Journal:  Phytochemistry       Date:  2004-10       Impact factor: 4.072

  7 in total
  2 in total

1.  Many InChIs and quite some feat.

Authors:  Wendy A Warr
Journal:  J Comput Aided Mol Des       Date:  2015-06-17       Impact factor: 3.686

2.  Database Independent Automated Structure Elucidation of Organic Molecules Based on IR, 1H NMR, 13C NMR, and MS Data.

Authors:  Matevž Pesek; Andraž Juvan; Jure Jakoš; Janez Košmrlj; Matija Marolt; Martin Gazvoda
Journal:  J Chem Inf Model       Date:  2020-12-30       Impact factor: 4.956

  2 in total

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