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Literature DB >> 17630299

Pathotyping Escherichia coli by using miniaturized DNA microarrays.

Muna F Anjum¹, Muriel Mafura, Peter Slickers, Karin Ballmer, Peter Kuhnert, Martin J Woodward, Ralf Ehricht.

Abstract

The detection of virulence determinants harbored by pathogenic Escherichia coli is important for establishing the pathotype responsible for infection. A sensitive and specific miniaturized virulence microarray containing 60 oligonucleotide probes was developed. It detected six E. coli pathotypes and will be suitable in the future for high-throughput use.

Entities: Chemical Disease Species

Mesh：

Substances：

Year: 2007 PMID： 17630299 PMCID： PMC2042074 DOI： 10.1128/AEM.00419-07

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

25 in total

1. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

Authors: R A Welch; V Burland; G Plunkett; P Redford; P Roesch; D Rasko; E L Buckles; S-R Liou; A Boutin; J Hackett; D Stroud; G F Mayhew; D J Rose; S Zhou; D C Schwartz; N T Perna; H L T Mobley; M S Donnenberg; F R Blattner
Journal: Proc Natl Acad Sci U S A Date: 2002-12-05 Impact factor: 11.205

2. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Authors: N T Perna; G Plunkett; V Burland; B Mau; J D Glasner; D J Rose; G F Mayhew; P S Evans; J Gregor; H A Kirkpatrick; G Pósfai; J Hackett; S Klink; A Boutin; Y Shao; L Miller; E J Grotbeck; N W Davis; A Lim; E T Dimalanta; K D Potamousis; J Apodaca; T S Anantharaman; J Lin; G Yen; D C Schwartz; R A Welch; F R Blattner
Journal: Nature Date: 2001-01-25 Impact factor: 49.962

3. Complete nucleotide sequence and analysis of the locus of enterocyte Effacement from rabbit diarrheagenic Escherichia coli RDEC-1.

Authors: C Zhu; T S Agin; S J Elliott; L A Johnson; T E Thate; J B Kaper; E C Boedeker
Journal: Infect Immun Date: 2001-04 Impact factor: 3.441

4. Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays.

Authors: D R Call; F J Brockman; D P Chandler
Journal: Int J Food Microbiol Date: 2001-07-20 Impact factor: 5.277

5. Comparative sequence analysis of the plasmid-encoded regulator of enteropathogenic Escherichia coli Strains.

Authors: I N Okeke; J A Borneman; S Shin; J L Mellies; L E Quinn; J B Kaper
Journal: Infect Immun Date: 2001-09 Impact factor: 3.441

6. Microarray analysis of microbial virulence factors.

Authors: V Chizhikov; A Rasooly; K Chumakov; D D Levy
Journal: Appl Environ Microbiol Date: 2001-07 Impact factor: 4.792

7. Detection and quantitation of enterohemorrhagic Escherichia coli O157, O111, and O26 in beef and bovine feces by real-time polymerase chain reaction.

Authors: Vijay K Sharma
Journal: J Food Prot Date: 2002-09 Impact factor: 2.077

8. Detection of the enteroaggregative Escherichia coli heat-stable enterotoxin 1 (EAST1) gene and its relationship with fimbrial and enterotoxin markers in E. coli isolates from pigs with diarrhoea.

Authors: J Osek
Journal: Vet Microbiol Date: 2003-01-02 Impact factor: 3.293

9. Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 Shiga toxin family by multiplex PCR.

Authors: Gehua Wang; Clifford G Clark; Frank G Rodgers
Journal: J Clin Microbiol Date: 2002-10 Impact factor: 5.948

10. PCR for detection of cdt-III and the relative frequencies of cytolethal distending toxin variant-producing Escherichia coli isolates from humans and cattle.

Authors: Clifford G Clark; Shelley T Johnson; Russell H Easy; Jennifer L Campbell; Frank G Rodgers
Journal: J Clin Microbiol Date: 2002-07 Impact factor: 5.948

23 in total

1. Potentials and limitations of molecular diagnostic methods in food safety.

Authors: Andrea Lauri; Paola O Mariani
Journal: Genes Nutr Date: 2008-12-07 Impact factor: 5.523

2. The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities.

Authors: Yong-Jin Lee; Joy D van Nostrand; Qichao Tu; Zhenmei Lu; Lei Cheng; Tong Yuan; Ye Deng; Michelle Q Carter; Zhili He; Liyou Wu; Fang Yang; Jian Xu; Jizhong Zhou
Journal: ISME J Date: 2013-06-13 Impact factor: 10.302

Review 3. Basic concepts of microarrays and potential applications in clinical microbiology.

Authors: Melissa B Miller; Yi-Wei Tang
Journal: Clin Microbiol Rev Date: 2009-10 Impact factor: 26.132

4. Differential phenotypic and genotypic characteristics of qnrS1-harboring plasmids carried by hospital and community commensal enterobacteria.

Authors: Le Thi Minh Vien; Manal Abuoun; Victoria Morrison; Nicholas Thomson; James I Campbell; Martin J Woodward; Nguyen Van Vinh Chau; Jeremy Farrar; Constance Schultsz; Stephen Baker
Journal: Antimicrob Agents Chemother Date: 2011-01-31 Impact factor: 5.191

5. Variability of Escherichia coli O157 strain survival in manure-amended soil in relation to strain origin, virulence profile, and carbon nutrition profile.

Authors: Eelco Franz; Angela H A M van Hoek; El Bouw; Henk J M Aarts
Journal: Appl Environ Microbiol Date: 2011-09-09 Impact factor: 4.792

6. Rapid microarray-based genotyping of enterohemorrhagic Escherichia coli serotype O156:H25/H-/Hnt isolates from cattle and clonal relationship analysis.

Authors: Lutz Geue; Susann Schares; Birgit Mintel; Franz J Conraths; Elke Müller; Ralf Ehricht
Journal: Appl Environ Microbiol Date: 2010-06-25 Impact factor: 4.792