Literature DB >> 17629634

Isochore pattern and gene distribution in the chicken genome.

Maria Costantini1, Miriam Di Filippo, Fabio Auletta, Giorgio Bernardi.   

Abstract

We report here investigations on the isochore pattern and the distribution of genes in the chromosomes of chicken. In spite of large differences in genome size and karyotype, the compositional properties and the gene distribution of the chicken genome are very similar to those recently published for the human genome, which is a good representative of most mammalian genomes. In fact, this similarity, which extends to the relative amounts and, also, to a large extent at least, to the average base composition of isochore families, is most interesting in view of the very large distance of mammals and birds for a common ancestor, which goes back to 310-340 million years ago. This raises important questions about genome evolution in vertebrates.

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Year:  2007        PMID: 17629634     DOI: 10.1016/j.gene.2007.05.025

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  14 in total

Review 1.  The Isochores as a Fundamental Level of Genome Structure and Organization: A General Overview.

Authors:  Maria Costantini; Héctor Musto
Journal:  J Mol Evol       Date:  2017-02-27       Impact factor: 2.395

Review 2.  But where did the centromeres go in the chicken genome models?

Authors:  Benoît Piégu; Peter Arensburger; Florian Guillou; Yves Bigot
Journal:  Chromosome Res       Date:  2018-09-17       Impact factor: 5.239

3.  Frequent gain and loss of intronic splicing regulatory elements during the evolution of vertebrates.

Authors:  Rodger B Voelker; Steffen Erkelenz; Vinicio Reynoso; Heiner Schaal; J Andrew Berglund
Journal:  Genome Biol Evol       Date:  2012-05-21       Impact factor: 3.416

4.  Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC(3) profiling in snake.

Authors:  Kazumi Matsubara; Shigehiro Kuraku; Hiroshi Tarui; Osamu Nishimura; Chizuko Nishida; Kiyokazu Agata; Yoshinori Kumazawa; Yoichi Matsuda
Journal:  BMC Genomics       Date:  2012-11-09       Impact factor: 3.969

5.  Nucleosome DNA sequence structure of isochores.

Authors:  Zakharia M Frenkel; Thomas Bettecken; Edward N Trifonov
Journal:  BMC Genomics       Date:  2011-04-21       Impact factor: 3.969

6.  Organizational heterogeneity of vertebrate genomes.

Authors:  Svetlana Frenkel; Valery Kirzhner; Abraham Korol
Journal:  PLoS One       Date:  2012-02-27       Impact factor: 3.240

7.  Large homogeneous genome regions (isochores) in soybean [glycine max (L.) merr].

Authors:  J L Woody; W Beavis; R C Shoemaker
Journal:  Front Genet       Date:  2012-06-01       Impact factor: 4.599

8.  The isochore patterns of invertebrate genomes.

Authors:  Rosalia Cammarano; Maria Costantini; Giorgio Bernardi
Journal:  BMC Genomics       Date:  2009-11-18       Impact factor: 3.969

9.  Evidence of the adaptive evolution of immune genes in chicken.

Authors:  Tim Downing; Paul Cormican; Cliona O'Farrelly; Daniel G Bradley; Andrew T Lloyd
Journal:  BMC Res Notes       Date:  2009-12-15

10.  The evolution of isochore patterns in vertebrate genomes.

Authors:  Maria Costantini; Rosalia Cammarano; Giorgio Bernardi
Journal:  BMC Genomics       Date:  2009-04-03       Impact factor: 3.969

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